FC876302

Overview
NameFC876302
Unique NameFC876302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10247 contig Ccv1_Contig10247:1..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876302 vs. ExPASy Swiss-Prot
Match: TMX3_HUMAN (Protein disulfide-isomerase TMX3 OS=Homo sapiens GN=TMX3 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.443e-16
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  154 DNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVK 468
            D   KE   D   LV+FYAPWCGHCKKL P + ++G   K   S V +GK+D   + S+ S++GV+GYPTI+   KG L    Y GPR+ + + E+ +   G  ++
Sbjct:   32 DESFKENRNDDIWLVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLL-KGDL-AYNYRGPRTKDDIIEFAHRVSGALIR 135          
BLAST of FC876302 vs. ExPASy Swiss-Prot
Match: TMX3_MOUSE (Protein disulfide-isomerase TMX3 OS=Mus musculus GN=Tmx3 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.658e-15
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  193 LVEFYAPWCGHCKKLAPEYEKLGASFKKAKS-VLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVK 468
            LV+FYAPWCGHCKKL P + ++G   K   S V +GK+D   + S+ S++GV+GYPTI+   KG L    Y GPR+ + + E+ +   G  ++
Sbjct:   48 LVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYSSIASEFGVRGYPTIKLL-KGDL-AYNYRGPRTKDDIIEFAHRVSGALIR 138          
BLAST of FC876302 vs. ExPASy Swiss-Prot
Match: ERP44_BOVIN (Endoplasmic reticulum resident protein ERp44 OS=Bos taurus GN=ERP44 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.967e-14
Identity = 36/121 (29.75%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  100 LTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKK----AKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNE 450
            L  +  + +  +++ L  +N +  +     ALV FYA WC   + L P +E+     K+    A  V+  +VDCD+H  +  +Y +  YPT++ F  G +  ++Y G RS +ALA+Y+  +
Sbjct:   19 LVTWVFTPVTAEIISLDTENIDDILNNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNANQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139          
BLAST of FC876302 vs. ExPASy Swiss-Prot
Match: ERP44_HUMAN (Endoplasmic reticulum resident protein ERp44 OS=Homo sapiens GN=ERP44 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.099e-14
Identity = 41/159 (25.79%), Postives = 77/159 (48.43%), Query Frame = 1
Query:  100 LTLFFVSALADDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEK----LGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLVEFY 564
            L  +  + +  ++  L  +N ++ +     ALV FYA WC   + L P +E+    +   F     V+  +VDCD+H  +  +Y +  YPT++ F  G +  ++Y G RS +ALA+Y+  +           S+ +    D  +   LD+SK  ++ ++
Sbjct:   19 LVTWVFTPVTTEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ----------KSDPIQEIRDLAEITTLDRSKRNIIGYF 167          
BLAST of FC876302 vs. ExPASy Swiss-Prot
Match: ERP44_MOUSE (Endoplasmic reticulum resident protein ERp44 OS=Mus musculus GN=Erp44 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.552e-13
Identity = 41/149 (27.52%), Postives = 73/149 (48.99%), Query Frame = 1
Query:  133 DVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKA----KSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIV-LDKSKDVLVEFY 564
            ++  L  +N ++ +     ALV FYA WC   + L P +E+     K+       V+  +VDCD+H  +  +Y +  YPT++ F  G +  ++Y G RS +ALA+Y+  +    V               + DE+  LD+SK  ++ ++
Sbjct:   30 EIASLDSENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEYPDKNQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSNPVH-----------EIQSLDEVTNLDRSKRNIIGYF 167          
BLAST of FC876302 vs. ExPASy Swiss-Prot
Match: BS2_TRYBB (Bloodstream-specific protein 2 OS=Trypanosoma brucei brucei GN=BS2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.027e-13
Identity = 45/137 (32.85%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  145 LTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNVVVLTADNFDEIVLDKSKDVLV 555
            LT++NF + + +    LV+FY   CG+C+ LAPE+EK  A+ +   + L+G+VDC     L + + ++GYPTI  F  G  E + Y G R+ + + +Y+      NV  A  P       A N +E+   K +  +V
Sbjct:   24 LTKENFNETIAKSEIFLVKFYVDTCGYCQMLAPEWEK--AANETIDNALMGEVDCHSQPELAANFSIRGYPTIILFRNGK-EAEHYGGARTKDDIIKYIK----ANVGPAVTP-------ASNAEEVTRAKEEHDVV 146          

HSP 2 Score: 72.4034 bits (176), Expect = 2.241e-12
Identity = 37/121 (30.58%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  130 DDVVVLTEDNFEKEVGQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYEGPRSAEALAEYVNNEGGTNVKIAAVPSNV 492
            D    +     +K +   +  L+ F+APWCGHCK  AP ++K+   F  A  +++ ++D   +    S + V  +PT+ + P G  +P  +EG RS E + E+V     T  K++  P+NV
Sbjct:  349 DGKTTIVAKTMQKHLTSGKDMLILFFAPWCGHCKNFAPTFDKIAKEF-DATDLIVAELDATANYVNSSTFTVTAFPTVFFVPNGG-KPVVFEGERSFENVYEFVRKH-VTTFKVSEKPANV 466          
BLAST of FC876302 vs. ExPASy Swiss-Prot
Match: TXND_THEPA (Thioredoxin domain-containing protein OS=Theileria parva GN=TP02_0602 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.516e-13
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  136 VVVLTEDNFEKEVGQDRGA-----LVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKKYE-GPRSAEALAEY 438
            +V+L E NFEK      GA      V+FYAPWC HC+K+AP +E L  + K    V +  VD   + +L  ++ ++GYPT+  F KG +   +YE G R+ E L+E+
Sbjct:   32 LVLLNEKNFEKLTQASTGATTGTWFVKFYAPWCSHCRKMAPAWESLAKALK--GQVNVADVDVTRNLNLGKRFQIRGYPTLLLFHKGKM--YQYEGGERTVEKLSEF 134          
BLAST of FC876302 vs. ExPASy Swiss-Prot
Match: MPD1_YEAST (Protein disulfide-isomerase MPD1 OS=Saccharomyces cerevisiae GN=MPD1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 33/86 (38.37%), Postives = 49/86 (56.98%), Query Frame = 1
Query:  145 LTEDNFEKEV-GQDRGALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIGKVDCDEHKSLCSKYGVQGYPTIQWFPKGSLEPKK 399
            LT  +F+K +   +  +LVEFYAPWCGHCKKL+  + K          V     D +++K+LC+KY V G+PT+  F    ++  K
Sbjct:   34 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSK 119          
BLAST of FC876302 vs. ExPASy Swiss-Prot
Match: PDI_ALTAL (Protein disulfide-isomerase (Fragment) OS=Alternaria alternata PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.520e-11
Identity = 34/101 (33.66%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  361 IQWFPKGSLEPKKYEGPRSAEALAEYVNN----EGGTNVKIAAVPSN----VVVLTADNFDEIVLDKSKDVLVEFYAPWCGHCKNFAPTYEKVAAAFTLED 639
            IQ   K    P   E   + + + ++V++    +   ++K   +P +    V V+ A N+ ++V+D  KDVLVEFYAPWCGHCK  AP YE++   +  ++
Sbjct:  187 IQRTEKNEKFPTNQEAKITEKEIGKFVDDFLAGKIDPSIKSEPIPESNDGPVTVVVAHNYKDVVIDNDKDVLVEFYAPWCGHCKALAPKYEELGQLYASDE 287          
The following BLAST results are available for this feature:
BLAST of FC876302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
TMX3_HUMAN7.443e-1641.51Protein disulfide-isomerase TMX3 OS=Homo sapiens G... [more]
TMX3_MOUSE1.658e-1543.01Protein disulfide-isomerase TMX3 OS=Mus musculus G... [more]
ERP44_BOVIN6.967e-1429.75Endoplasmic reticulum resident protein ERp44 OS=Bo... [more]
ERP44_HUMAN9.099e-1425.79Endoplasmic reticulum resident protein ERp44 OS=Ho... [more]
ERP44_MOUSE1.552e-1327.52Endoplasmic reticulum resident protein ERp44 OS=Mu... [more]
BS2_TRYBB2.027e-1332.85Bloodstream-specific protein 2 OS=Trypanosoma bruc... [more]
TXND_THEPA4.516e-1339.25Thioredoxin domain-containing protein OS=Theileria... [more]
MPD1_YEAST1.453e-1138.37Protein disulfide-isomerase MPD1 OS=Saccharomyces ... [more]
PDI_ALTAL5.520e-1133.66Protein disulfide-isomerase (Fragment) OS=Alternar... [more]

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Properties
Property NameValue
Genbank descriptionC32003B05EF DevOvary1 Citrus clementina cDNA clone C32003B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876302 ID=FC876302; Name=FC876302; organism=Citrus clementina; type=EST; length=643bp
GGAGCGGAGTAAAAACCAAAATACCTGCACAGGGGGAAAAAAAAAAAAAT
AAGAAAGAGAGAAATGGAGAGGTATCAGATCTGGCTAGCTCTAGGCACTT
TAACCTTGTTCTTCGTATCAGCTCTAGCGGACGATGTCGTTGTGCTAACA
GAAGACAACTTCGAGAAGGAGGTTGGTCAGGACAGGGGAGCTCTTGTTGA
GTTTTACGCTCCTTGGTGTGGCCACTGTAAAAAGCTTGCTCCAGAGTATG
AGAAACTTGGTGCAAGCTTTAAGAAAGCAAAGTCTGTCTTGATTGGAAAG
GTGGACTGTGACGAGCATAAGAGCTTATGCAGCAAATATGGTGTTCAAGG
ATACCCAACAATTCAATGGTTTCCTAAAGGTTCTTTGGAACCCAAAAAGT
ATGAAGGGCCACGATCTGCTGAAGCCCTTGCTGAGTATGTGAATAATGAA
GGAGGAACCAATGTGAAGATAGCTGCAGTCCCATCCAATGTGGTGGTACT
AACAGCTGATAATTTTGATGAGATAGTTTTGGACAAAAGCAAAGATGTTT
TGGTTGAATTTTATGCACCATGGTGTGGCCATTGCAAAAACTTTGCGCCT
ACATATGAAAAGGTGGCAGCCGCATTTACATTGGAAGATGATG
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