FC876305

Overview
NameFC876305
Unique NameFC876305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 2.736e-65
Identity = 118/146 (80.82%), Postives = 131/146 (89.73%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M TV E+R AQRA GPAT++AIGTATP + V+Q+ YPDYYFRIT SEHMT+LKEKFKRMCDKSMIKKRYMYLTEEILKENPN+CAYMAPSLD RQD+VVVEVP+ GK  AT+ IKEWGQPKSKITHL+FC TSGVDMPGA Y+LTK
Sbjct:    1 MVTVDEVRKAQRAQGPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYMYLTEEILKENPNVCAYMAPSLDTRQDMVVVEVPRLGK-AATEAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTK 145          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 3.573e-65
Identity = 118/144 (81.94%), Postives = 129/144 (89.58%), Query Frame = 1
Query:   55 TVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            ++ EIR AQRADGPA +LAIGTA PA+ V QA+YPDYYFRIT SEHMT+LKEKFKRMCDKS I+KR+M++TEE LKENPNMCAYMAPSLDARQDIVVVEVPK GKE A K IKEWGQPKSKITHL+FC TSGVDMPGA YQLTK
Sbjct:    8 SLDEIRKAQRADGPAGILAIGTANPANYVIQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHVTEEFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTK 151          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS8_IPOBA (Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DIV PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 3.573e-65
Identity = 116/146 (79.45%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M TV+E+R AQRA+GPAT+LAIGT TPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI VVEVPK GKE A   IKEWGQPKSKITH++FC TSG+DMPGA YQLTK
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGIDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS1_SOLLC (Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS1 PE=2 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 3.573e-65
Identity = 118/146 (80.82%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M TV+E R AQRA+GPAT+LAIGT+TP++ V+Q+ YPDYYFRIT SEH TELKEKFKRMCDKSMIKKRYM+LTEEILKENPNMCAYMAPSLDARQDIVVVEVPK GK    K IKEWGQPKSKITHL+FC TSGVDMP   YQL K
Sbjct:    1 MVTVEEYRKAQRAEGPATILAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKRGTQKAIKEWGQPKSKITHLVFCTTSGVDMPACDYQLAK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS1_IPOBA (Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF1 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 3.573e-65
Identity = 116/146 (79.45%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M TV+E+R AQRA+GPAT+LAIGT TPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI VVEVPK GKE A   IKEWGQPKSKITH++FC TSG+DMPGA YQLTK
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGIDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS3_SINAL (Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 4.667e-65
Identity = 117/145 (80.69%), Postives = 130/145 (89.66%), Query Frame = 1
Query:   52 ATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            +++ EIR AQRADGPA +LAIGTA PA+ V QA+YPDYYFRIT SEHMT+LKEKFKRMCDKS I+KR+M+LTEE LK+NPNMCAYMAPSLDARQDIVVVEVPK GKE A K IKEWGQPKSKITH++FC TSGVDMPGA YQLTK
Sbjct:    7 SSLDEIRKAQRADGPAGILAIGTANPANHVIQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEFLKDNPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTK 151          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS1_SINAL (Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 4.667e-65
Identity = 117/145 (80.69%), Postives = 130/145 (89.66%), Query Frame = 1
Query:   52 ATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            +++ EIR AQRADGPA +LAIGTA PA+ V QA+YPDYYFRIT SEHMT+LKEKFKRMCDKS I+KR+M+LTEE LK+NPNMCAYMAPSLDARQDIVVVEVPK GKE A K IKEWGQPKSKITH++FC TSGVDMPGA YQLTK
Sbjct:    7 SSLDEIRKAQRADGPAGILAIGTANPANHVIQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEFLKDNPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTK 151          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHSY_PINST (Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 6.095e-65
Identity = 116/146 (79.45%), Postives = 131/146 (89.73%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            MA ++  R AQRADGPAT+LAIGTATP ++V+Q+ YPDYYF+IT SEHMTELKEKF+RMCDKS IKKRYMYLTEEIL ENP++CAYMAPSLDARQD+VVVEVP+ GKE A K IKEWGQPKSKITH+IFC TSGVDMPGA YQ+TK
Sbjct:    6 MADLEAFRKAQRADGPATILAIGTATPPNAVDQSTYPDYYFKITNSEHMTELKEKFRRMCDKSGIKKRYMYLTEEILNENPSVCAYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQMTK 151          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS7_IPOBA (Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-DIII PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 6.095e-65
Identity = 117/146 (80.14%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M TV+E+R A+RA+GPAT+LAIGTATPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI VVEVPK GKE A   IKEWGQPKSKITH+ FC TSGVDMPGA YQLTK
Sbjct:    1 MVTVEEVRKAKRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVFFCTTSGVDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS6_PEA (Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 6.095e-65
Identity = 117/146 (80.14%), Postives = 130/146 (89.04%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M +V EIR AQRA+GPAT+LAIGTATPA+ V Q+ YPD+YF+IT SEH T LKEKF+RMCDKSMIK+RYMYLTEEILKENP++C YMAPSLDARQD+VVVEVP+ GKE A K IKEWGQPKSKITHLIFC TSGVDMPGA YQLTK
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTATPANCVEQSTYPDFYFKITNSEHKTVLKEKFQRMCDKSMIKRRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTK 146          
The following BLAST results are available for this feature:
BLAST of FC876305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
CHS1_CITSI2.736e-6580.82Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHSY_CARAN3.573e-6581.94Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHS8_IPOBA3.573e-6579.45Chalcone synthase DIV OS=Ipomoea batatas GN=CHS-DI... [more]
CHS1_SOLLC3.573e-6580.82Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS... [more]
CHS1_IPOBA3.573e-6579.45Chalcone synthase LF1 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS3_SINAL4.667e-6580.69Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 S... [more]
CHS1_SINAL4.667e-6580.69Chalcone synthase 1 OS=Sinapis alba GN=CHS1 PE=2 S... [more]
CHSY_PINST6.095e-6579.45Chalcone synthase OS=Pinus strobus GN=CHS PE=2 SV=... [more]
CHS7_IPOBA6.095e-6580.14Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-D... [more]
CHS6_PEA6.095e-6580.14Chalcone synthase 6 OS=Pisum sativum GN=CHS6 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC32003B08EF DevOvary1 Citrus clementina cDNA clone C32003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876305 ID=FC876305; Name=FC876305; organism=Citrus clementina; type=EST; length=487bp
CTCACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAAT
GGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGTCCGGCCA
CCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAACCAGGCT
GATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGA
GCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGATTAAGAAGC
GTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGC
GCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTGGTGGTCGA
AGTGCCGAAGTTCGGGAAAGAAGTTGCTACAAAGGTCATCAAAGAATGGG
GCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCATCACCTCCGGC
GTCGACATGCCCGGCGCCTACTACCAGCTCACCAAAC
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