FC876305

Overview
NameFC876305
Unique NameFC876305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS4_IPOBA (Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF4 PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 6.095e-65
Identity = 116/146 (79.45%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M TV+E+R AQRA+GPAT+LAIGT TPA+ VNQ+ YPDYYFRIT SEH TELKE+F+RMCDKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI VVEVPK GKE A   IKEWGQPKSKITH++FC TSGVDMPGA YQLTK
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKERFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS1_MAIZE (Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 6.095e-65
Identity = 116/144 (80.56%), Postives = 128/144 (88.89%), Query Frame = 1
Query:   55 TVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            TV E+R  QRA GPATVLAIGTATPA+ V QADYPDYYFRITKS+H+T+LKEKFKRMCDKSMI+KRYM+LTEE L ENP+MCAYMAPSLDARQD+VV EVPK GK  A + IKEWGQPKS+ITHL+FC TSGVDMPGA YQLTK
Sbjct:    7 TVDEVRKGQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMCDKSMIRKRYMHLTEEFLSENPSMCAYMAPSLDARQDVVVTEVPKLGKAAAQEAIKEWGQPKSRITHLVFCTTSGVDMPGADYQLTK 150          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHSY_PINSY (Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 7.961e-65
Identity = 116/146 (79.45%), Postives = 129/146 (88.36%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M  ++  R AQRADGPAT+LAIGTATP ++V+Q+ YPDYYF+IT SEHMTELKEKF+RMCDKS IKKRYMYLTEEILKENP +C YMAPSLDARQD+VVVEVP+ GKE A K IKEWGQPKSKITH+IFC TSGVDMPGA YQLTK
Sbjct:    6 MKDLEAFRKAQRADGPATILAIGTATPPNAVDQSSYPDYYFKITNSEHMTELKEKFRRMCDKSAIKKRYMYLTEEILKENPKVCEYMAPSLDARQDMVVVEVPRLGKEAAAKAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTK 151          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 7.961e-65
Identity = 117/146 (80.14%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M +V EIR AQRA+GPAT+LAIGTA PA+ V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEILKENP++C YMAPSLDARQD+VVVEVP+ GKE A K IKEWGQPKSKITHLIFC TSGVDMPGA YQLTK
Sbjct:    1 MVSVSEIRQAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSLCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS2_MEDSA (Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 7.961e-65
Identity = 117/146 (80.14%), Postives = 129/146 (88.36%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M +V EIR AQRA+GPAT+LAIGTA PA+ V Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+RYMYLTEEILKENPN+C YMAPSLDARQD+VVVEVP+ GKE A K IKEWGQPKSKITHLI C TSGVDMPGA YQLTK
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.040e-64
Identity = 116/145 (80.00%), Postives = 130/145 (89.66%), Query Frame = 1
Query:   52 ATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            A ++EIRN QRA GPA +LAIGTATP++ V QADYPDYYFRIT SEHMT+LK KFKRMC+KSMI+KRYM++TEE LKENPN+CAY APSLDARQD+VVVEVP+ GKE A+K IKEWGQPKSKITHLIFC TSGVDMPGA YQLTK
Sbjct:    7 AEIEEIRNRQRAQGPANILAIGTATPSNCVYQADYPDYYFRITNSEHMTDLKLKFKRMCEKSMIRKRYMHITEEYLKENPNVCAYEAPSLDARQDLVVVEVPRLGKEAASKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTK 151          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.040e-64
Identity = 116/144 (80.56%), Postives = 129/144 (89.58%), Query Frame = 1
Query:   55 TVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            ++ EIR AQRADGPA +L IGTA PA+ V QA+YPDYYFRIT SEHMT+LKEKF+RMCDKSMI+KR+M+LTE+ LKENPNMCAYMAPSLDARQDIVVVEVPK GKE A + IKEWGQPKSKITHL+FC TSGVDMPGA YQLTK
Sbjct:    7 SLDEIRKAQRADGPAGILGIGTANPANHVIQAEYPDYYFRITNSEHMTDLKEKFQRMCDKSMIRKRHMHLTEDFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVRAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTK 150          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS4_TRISU (Chalcone synthase 4 (Fragment) OS=Trifolium subterraneum GN=CHS4 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.040e-64
Identity = 117/146 (80.14%), Postives = 128/146 (87.67%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M +V EIR AQRA+GPAT+LAIGTA PA+ V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEILKENP++C YMAPSLDARQD+VVVEVP+ GKE A K IKEWGQPKSKITHLIFC TSGVDMPGA YQLTK
Sbjct:    1 MVSVSEIRKAQRAEGPATILAIGTANPANKVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTK 146          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.040e-64
Identity = 115/143 (80.42%), Postives = 130/143 (90.91%), Query Frame = 1
Query:   58 VQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            V+ IR AQRA+GPAT+LAIGTATPA+ V QADYPDYYFR+T+SEHM +LKEKF+RMCDKSMI+KRYM++TEE LKENP+MC +MAPSLDARQD+VVVEVPK GKE ATK IKEWG PKSKITHL+FC TSGVDMPGA YQLTK
Sbjct:   10 VETIRKAQRAEGPATILAIGTATPANCVYQADYPDYYFRVTESEHMVDLKEKFQRMCDKSMIRKRYMHITEEFLKENPSMCKFMAPSLDARQDLVVVEVPKLGKEAATKAIKEWGFPKSKITHLVFCTTSGVDMPGADYQLTK 152          
BLAST of FC876305 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.358e-64
Identity = 114/146 (78.08%), Postives = 130/146 (89.04%), Query Frame = 1
Query:   49 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKFGKEVATKVIKEWGQPKSKITHLIFCITSGVDMPGAYYQLTK 486
            M TV+E+R AQRA+GPAT+LAIGTATP + V+Q+ YPD+YFR+T SEH  ELK KF+RMCD S IKKRYM+LTEEILKENPN+CAYMAPSLDARQD+VVVE+PK GKE AT+ IKEWGQPKSKITHL+FC TSGVDMPGA YQLTK
Sbjct:    1 MVTVEEVRKAQRAEGPATILAIGTATPPNYVDQSTYPDFYFRVTNSEHKKELKAKFQRMCDNSQIKKRYMHLTEEILKENPNICAYMAPSLDARQDMVVVEIPKLGKEAATRAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTK 146          
The following BLAST results are available for this feature:
BLAST of FC876305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
CHS4_IPOBA6.095e-6579.45Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS1_MAIZE6.095e-6580.56Chalcone synthase WHP1 OS=Zea mays GN=WHP1 PE=3 SV... [more]
CHSY_PINSY7.961e-6579.45Chalcone synthase OS=Pinus sylvestris GN=CHS PE=3 ... [more]
CHS3_TRISU7.961e-6580.14Chalcone synthase 3 OS=Trifolium subterraneum GN=C... [more]
CHS2_MEDSA7.961e-6580.14Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=... [more]
CHSY_PETCR1.040e-6480.00Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHSY_MATIN1.040e-6480.56Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHS4_TRISU1.040e-6480.14Chalcone synthase 4 (Fragment) OS=Trifolium subter... [more]
CHS3_GERHY1.040e-6480.42Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHSY_HYDMC1.358e-6478.08Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]

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Properties
Property NameValue
Genbank descriptionC32003B08EF DevOvary1 Citrus clementina cDNA clone C32003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876305 ID=FC876305; Name=FC876305; organism=Citrus clementina; type=EST; length=487bp
CTCACCAAGCACGAGCCACCCACATATTCATTAAGGGTTCAACTTGAAAT
GGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGTCCGGCCA
CCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAACCAGGCT
GATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGACGGA
GCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGATTAAGAAGC
GTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACATGTGC
GCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTGGTGGTCGA
AGTGCCGAAGTTCGGGAAAGAAGTTGCTACAAAGGTCATCAAAGAATGGG
GCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCATCACCTCCGGC
GTCGACATGCCCGGCGCCTACTACCAGCTCACCAAAC
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