FC876306

Overview
NameFC876306
Unique NameFC876306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length456
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:48..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.539e-28
Identity = 55/68 (80.88%), Postives = 63/68 (92.65%), Query Frame = 2 
Query:  239 LKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQL 442
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYEL 68
[Close]
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.193e-17
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 2 
Query:  323 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 41
The following BLAST results are available for this feature:
BLAST of FC876306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
THS2_ARAHY6.539e-2880.88Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA5.193e-1797.56Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003B09EF DevOvary1 Citrus clementina cDNA clone C32003B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876306 ID=FC876306; Name=FC876306; organism=Citrus clementina; type=EST; length=456bp
TCTTGTACAAAGGTGGCCGTATCAAGAAAGCAGAAACGCTCAGCGTGCCG
ACGGACCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGT
GTCAACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGA
GCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGA
TGATTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAAC
CCCAACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACAT
TGTGGTGGCCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACCAAGGCCA
TCAAAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGC
ACCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAACTG
ATCGGC
back to top