FC876306

Overview
NameFC876306
Unique NameFC876306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length456
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:48..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS7_IPOBA (Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-DIII PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 6.688e-65
Identity = 117/141 (82.98%), Postives = 127/141 (90.07%), Query Frame = 2
Query:   23 QESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            +E R A+RA+GPAT+LAIGTATPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI V EVPKLGKEAA  AIKEWGQPKSKITH+ FCTTSGVDMPGADYQLT
Sbjct:    5 EEVRKAKRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVFFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS4_IPOBA (Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF4 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 6.688e-65
Identity = 116/141 (82.27%), Postives = 127/141 (90.07%), Query Frame = 2
Query:   23 QESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            +E R AQRA+GPAT+LAIGT TPA+ VNQ+ YPDYYFRIT SEH TELKE+F+RMCDKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI V EVPKLGKEAA  AIKEWGQPKSKITH++FCTTSGVDMPGADYQLT
Sbjct:    5 EEVRKAQRAEGPATILAIGTVTPANCVNQSTYPDYYFRITNSEHKTELKERFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS2_TRISU (Chalcone synthase 2 OS=Trifolium subterraneum GN=CHS2 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 6.688e-65
Identity = 117/140 (83.57%), Postives = 127/140 (90.71%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA+GPAT+LAIGTA PA+ V QA YPD+YF+IT SEH  ELKEKF+RMCDKSMIK RYMYLTEEILKENP++C YMAPSLDARQD+VV EVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT
Sbjct:    6 EIRKAQRAEGPATILAIGTANPANRVEQATYPDFYFKITNSEHKVELKEKFQRMCDKSMIKSRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS5_PEA (Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 8.735e-65
Identity = 116/140 (82.86%), Postives = 128/140 (91.43%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA+GPAT+LAIGTA PA+ V Q+ YPD+YFRIT SEH TELK+KF+RMCDKSMI +RYMYLTEEILKENP++C YMAPSLDARQD+VV EVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT
Sbjct:    6 EIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKTELKQKFQRMCDKSMINRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS3_PEA (Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 8.735e-65
Identity = 116/140 (82.86%), Postives = 128/140 (91.43%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA+GPAT+LAIGTA PA+ V Q+ YPD+YFRIT SEH TELK+KF+RMCDKSMI +RYMYLTEEILKENP++C YMAPSLDARQD+VV EVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT
Sbjct:    6 EIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFRITNSEHKTELKQKFQRMCDKSMINRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS3_IPOBA (Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF3 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.141e-64
Identity = 117/140 (83.57%), Postives = 126/140 (90.00%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA+GPAT+LAIGTATPA+ VNQ+ YPDYYFRIT SEH TELKEKF+RMCDKSMI KRYM+LTEEILKENP+ C YMAPSLDARQDI V EVPKLGKEAA  AIK WGQPKSKITH++FCTTSGVDMPGADYQLT
Sbjct:    6 EVRKAQRAEGPATILAIGTATPANCVNQSTYPDYYFRITNSEHKTELKEKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIAVVEVPKLGKEAAQSAIKGWGQPKSKITHVVFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.490e-64
Identity = 114/141 (80.85%), Postives = 129/141 (91.49%), Query Frame = 2
Query:   23 QESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            +E R AQRA+GPAT+LAIGTATP + V+Q+ YPD+YFR+T SEH  ELK KF+RMCD S IKKRYM+LTEEILKENPN+CAYMAPSLDARQD+VV E+PKLGKEAAT+AIKEWGQPKSKITHL+FCTTSGVDMPGADYQLT
Sbjct:    5 EEVRKAQRAEGPATILAIGTATPPNYVDQSTYPDFYFRVTNSEHKKELKAKFQRMCDNSQIKKRYMHLTEEILKENPNICAYMAPSLDARQDMVVVEIPKLGKEAATRAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS9_MEDSA (Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.490e-64
Identity = 115/140 (82.14%), Postives = 128/140 (91.43%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA+GPAT++AIGTA PA+ V Q+ YPD+YF+IT SEH  ELKEKF+RMCDKSMIK+RYMYLTEEILKENP++C YMAPSLDARQD+VV EVP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT
Sbjct:    6 EIRQAQRAEGPATIMAIGTANPANCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS8_MEDSA (Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 1.490e-64
Identity = 116/140 (82.86%), Postives = 128/140 (91.43%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA+GPAT+LAIGTA PA+ V Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+RYMYLTEEILKENP++C YMAPSLDARQD+VV EVP+LGKEAA KAIKEWGQPKSKITHLI CTTSGVDMPGADYQLT
Sbjct:    6 EIRTAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLT 145          
BLAST of FC876306 vs. ExPASy Swiss-Prot
Match: CHS4_MEDSA (Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 1.490e-64
Identity = 116/140 (82.86%), Postives = 128/140 (91.43%), Query Frame = 2
Query:   26 ESRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVAEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLT 445
            E R AQRA+GPAT+LAIGTA PA+ V Q+ YPD+YF+IT SEH TELKEKF+RMCDKSMIK+RYMYLTEEILKENP++C YMAPSLDARQD+VV EVP+LGKEAA KAIKEWGQPKSKITHLI CTTSGVDMPGADYQLT
Sbjct:    6 EIRKAQRAEGPATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPSVCEYMAPSLDARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGADYQLT 145          
The following BLAST results are available for this feature:
BLAST of FC876306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
CHS7_IPOBA6.688e-6582.98Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-D... [more]
CHS4_IPOBA6.688e-6582.27Chalcone synthase LF4 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS2_TRISU6.688e-6583.57Chalcone synthase 2 OS=Trifolium subterraneum GN=C... [more]
CHS5_PEA8.735e-6582.86Chalcone synthase 5 OS=Pisum sativum GN=CHS5 PE=3 ... [more]
CHS3_PEA8.735e-6582.86Chalcone synthase 3 OS=Pisum sativum GN=CHS3 PE=3 ... [more]
CHS3_IPOBA1.141e-6483.57Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF... [more]
CHSY_HYDMC1.490e-6480.85Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]
CHS9_MEDSA1.490e-6482.14Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=... [more]
CHS8_MEDSA1.490e-6482.86Chalcone synthase 8 OS=Medicago sativa GN=CHS8 PE=... [more]
CHS4_MEDSA1.490e-6482.86Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32003B09EF DevOvary1 Citrus clementina cDNA clone C32003B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876306 ID=FC876306; Name=FC876306; organism=Citrus clementina; type=EST; length=456bp
TCTTGTACAAAGGTGGCCGTATCAAGAAAGCAGAAACGCTCAGCGTGCCG
ACGGACCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGT
GTCAACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGA
GCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGA
TGATTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAAC
CCCAACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACAT
TGTGGTGGCCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACCAAGGCCA
TCAAAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGC
ACCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAACTG
ATCGGC
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