FC876315 | Citrus Genome Database

Overview


Name	FC876315
Unique Name	FC876315
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	694

Libraries


Library Name	Type
DevOvary1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10332	contig	Ccv1_Contig10332:1..695.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_DICDI (Calreticulin OS=Dictyostelium discoideum GN=crtA PE=1 SV=3)

HSP 1 Score: 241.891 bits (616), Expect = 2.460e-63
Identity = 114/198 (57.58%), Postives = 148/198 (74.75%), Query Frame = 1

Query:  103 VFFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEV-PCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPRPSRILTPRNLK 693
            V F++ FD+ WESRWV SDW K++  +G+  +TAGKW GD N KGIQTSED RFYA+SA+FP FSNK K LV Q++VK+EQK+DCGG Y+KLL  ++DQ  F G++ YSIMFGPD+CG ++K+VH IL Y G N LIKKE+   ETDQLTH YT ++ PD  Y +L+DN E Q+G+L  DW+LLP +  +I  P+  K
Sbjct:   21 VHFKDTFDNDWESRWVVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVLQYTVKNEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCG-ASKRVHVILNYKGKNHLIKKEINKVETDQLTHQYTLVISPDNTYKVLVDNKEIQAGNLADDWELLPSK--QIKDPKQSK 215

[Close]

BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.281e-63
Identity = 114/189 (60.32%), Postives = 135/189 (71.43%), Query Frame = 1

Query:  106 FFEERFDDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPE-FSNKDKTLVFQFSVKHEQKLDCGGGYMKLL--SGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            +F+E FD  W  RW  S WK  + +AGE+  TAGKW GD   DKGIQT  D +F+AISA     F N  K  V QFSVKHEQ LDCGGGY+K++  + E    +FGGDTPYSIMFGPDICGYST+KVH ILTY G N LIKK++  ETDQLTHVYT +++PD  Y +LID  E  SGSLY DWD+LPP+
Sbjct:   21 YFKETFDGSWADRWTKSSWKVSDGSAGEFKLTAGKWYGDAEADKGIQTGPDSKFFAISAPLATVFDNTGKDTVVQFSVKHEQDLDCGGGYIKVVPATSEKQMGEFGGDTPYSIMFGPDICGYSTRKVHVILTYKGKNYLIKKDIKAETDQLTHVYTLVIKPDNTYQVLIDLKEVASGSLYEDWDMLPPK 209

HSP 2 Score: 24.6386 bits (52), Expect = 4.281e-63
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3

Query:  651 PSKTIXDPDAKKPE 692
            P KTI DP A KPE
Sbjct:  207 PPKTIKDPKASKPE 220

[Close]

BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_CRIGR (Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.453e-57
Identity = 106/189 (56.08%), Postives = 135/189 (71.43%), Query Frame = 1

Query:  103 VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            V+F+E+F DG  W +RWV S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL  G +DQK   GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD  Y + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDDWTNRWVESKHKSD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPGSLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206

HSP 2 Score: 24.6386 bits (52), Expect = 1.453e-57
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3

Query:  651 PSKTIXDPDAKKPE 692
            P K I DPDA KPE
Sbjct:  204 PPKKIKDPDAAKPE 217

[Close]

BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_BOMMO (Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.454e-57
Identity = 105/186 (56.45%), Postives = 135/186 (72.58%), Query Frame = 1

Query:  103 VFFEERF-DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDP-NDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLP 654
            VFFEE+F DD WES WV S+    E   G++  TAGK+  DP +DKG++TSED RFYA+S +F  FSN+ K LV QF+VKHEQ +DCGGGY+K+   +++QK   G+TPY IMFGPDICG  TKKVH I +Y G N LIKK++ C+ D  TH+YT I++PD  Y +LIDN + +SG L +DWD LP
Sbjct:   21 VFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGDLEADWDFLP 204

HSP 2 Score: 26.1794 bits (56), Expect = 1.454e-57
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  651 PSKTIXDPDAKKPE 692
            P+K I DP+AKKPE
Sbjct:  204 PNKKIKDPEAKKPE 217

[Close]

BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_RAT (Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.220e-57
Identity = 105/189 (55.56%), Postives = 135/189 (71.43%), Query Frame = 1

Query:  103 VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            ++F+E+F DG  W +RWV S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL  G +DQK   GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD  Y + IDN + +SGSL  DWD LPP+
Sbjct:   21 IYFKEQFLDGDAWTNRWVESKHKSD---FGKFVLSSGKFYGDQEKDKGLQTSQDARFYALSARFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPGGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206

HSP 2 Score: 24.6386 bits (52), Expect = 3.220e-57
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3

Query:  651 PSKTIXDPDAKKPE 692
            P K I DPDA KPE
Sbjct:  204 PPKKIKDPDAAKPE 217

[Close]

BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_MACFU (Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.135e-57
Identity = 104/189 (55.03%), Postives = 133/189 (70.37%), Query Frame = 1

Query:  103 VFFEERF--DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            V+F+E+F   DGW SRW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQ    GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD  Y + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTSRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206

HSP 2 Score: 25.0238 bits (53), Expect = 7.135e-57
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3

Query:  651 PSKTIXDPDAKKPE 692
            P K I DPDA KPE
Sbjct:  204 PPKKIKDPDASKPE 217

[Close]

BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_MACFA (Calreticulin OS=Macaca fascicularis GN=CALR PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.135e-57
Identity = 104/189 (55.03%), Postives = 133/189 (70.37%), Query Frame = 1

Query:  103 VFFEERF--DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            V+F+E+F   DGW SRW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQ    GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD  Y + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTSRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206

HSP 2 Score: 25.0238 bits (53), Expect = 7.135e-57
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3

Query:  651 PSKTIXDPDAKKPE 692
            P K I DPDA KPE
Sbjct:  204 PPKKIKDPDASKPE 217

[Close]

BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_HUMAN (Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.135e-57
Identity = 104/189 (55.03%), Postives = 133/189 (70.37%), Query Frame = 1

Query:  103 VFFEERF--DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            V+F+E+F   DGW SRW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQ    GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD  Y + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTSRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206

HSP 2 Score: 25.0238 bits (53), Expect = 7.135e-57
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3

Query:  651 PSKTIXDPDAKKPE 692
            P K I DPDA KPE
Sbjct:  204 PPKKIKDPDASKPE 217

[Close]

BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_CERAE (Calreticulin OS=Cercopithecus aethiops GN=CALR PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 7.135e-57
Identity = 104/189 (55.03%), Postives = 133/189 (70.37%), Query Frame = 1

Query:  103 VFFEERF--DDGWESRWVTSDWKKDENTAGEWNYTAGKWNGDPN-DKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            V+F+E+F   DGW SRW+ S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQ    GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD  Y + IDN + +SGSL  DWD LPP+
Sbjct:   21 VYFKEQFLDGDGWTSRWIESKHKSD---FGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206

HSP 2 Score: 25.0238 bits (53), Expect = 7.135e-57
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3

Query:  651 PSKTIXDPDAKKPE 692
            P K I DPDA KPE
Sbjct:  204 PPKKIKDPDASKPE 217

[Close]

BLAST of FC876315 vs. ExPASy Swiss-Prot
Match: CALR_MOUSE (Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.213e-56
Identity = 104/189 (55.03%), Postives = 135/189 (71.43%), Query Frame = 1

Query:  103 VFFEERFDDG--WESRWVTSDWKKDENTAGEWNYTAGKWNGD-PNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNKLIKKEVPCETDQLTHVYTFILRPDAPYSILIDNVEKQSGSLYSDWDLLPPR 660
            ++F+E+F DG  W +RWV S  K D    G++  ++GK+ GD   DKG+QTS+D RFYA+SA+F  FSNK +TLV QF+VKHEQ +DCGGGY+KL    +DQK   GD+ Y+IMFGPDICG  TKKVH I  Y G N LI K++ C+ D+ TH+YT I+RPD  Y + IDN + +SGSL  DWD LPP+
Sbjct:   21 IYFKEQFLDGDAWTNRWVESKHKSD---FGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKFEPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPK 206

HSP 2 Score: 24.6386 bits (52), Expect = 1.213e-56
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 3

Query:  651 PSKTIXDPDAKKPE 692
            P K I DPDA KPE
Sbjct:  204 PPKKIKDPDAAKPE 217

The following BLAST results are available for this feature:

BLAST of FC876315 vs. ExPASy Swiss-Prot

BLAST of FC876315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48


Match Name	E-value	Identity	Description
CALR_DICDI	2.460e-63	57.58	Calreticulin OS=Dictyostelium discoideum GN=crtA P...	[more]
CALR_CHLRE	4.281e-63	60.32	Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=...	[more]
CALR_CRIGR	1.453e-57	56.08	Calreticulin OS=Cricetulus griseus GN=CALR PE=2 SV...	[more]
CALR_BOMMO	1.454e-57	56.45	Calreticulin OS=Bombyx mori GN=crt PE=1 SV=1	[more]
CALR_RAT	3.220e-57	55.56	Calreticulin OS=Rattus norvegicus GN=Calr PE=1 SV=...	[more]
CALR_MACFU	7.135e-57	55.03	Calreticulin OS=Macaca fuscata fuscata GN=CALR PE=...	[more]
CALR_MACFA	7.135e-57	55.03	Calreticulin OS=Macaca fascicularis GN=CALR PE=2 S...	[more]
CALR_HUMAN	7.135e-57	55.03	Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1	[more]
CALR_CERAE	7.135e-57	55.03	Calreticulin OS=Cercopithecus aethiops GN=CALR PE=...	[more]
CALR_MOUSE	1.213e-56	55.03	Calreticulin OS=Mus musculus GN=Calr PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C32003C07EF DevOvary1 Citrus clementina cDNA clone C32003C07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876315 ID=FC876315; Name=FC876315; organism=Citrus clementina; type=EST; length=694bp
GGAGAGCACTTCCTCTCTCTCGCTCTAAAAATGGCGAAATTAAACCCTAG
CTTTCTCTCTCTAACTCTCCTCACTATCTTCCTGACAATTGCCTCTGCTC
ACGTCTTCTTCGAAGAACGCTTTGACGATGGATGGGAAAGCCGGTGGGTT
ACATCTGATTGGAAGAAAGATGAGAACACGGCTGGAGAATGGAACTACAC
TGCTGGGAAATGGAATGGGGACCCGAATGATAAAGGTATTCAAACTAGTG
AAGACTACAGGTTCTATGCTATTTCAGCTGAATTCCCTGAATTCAGCAAC
AAGGACAAGACACTCGTGTTCCAGTTTTCTGTTAAGCACGAACAGAAGCT
TGACTGTGGTGGTGGCTACATGAAGTTGCTTAGTGGCGAAGTTGATCAGA
AGAAATTTGGTGGTGATACCCCTTACAGTATCATGTTTGGACCAGATATC
TGTGGTTATAGCACTAAGAAAGTGCATGCCATTCTTACCTACAATGGAAC
AAACAAATTGATCAAGAAGGAAGTACCATGTGAGACTGACCAACTCACTC
ATGTTTATACTTTCATCCTCCGTCCAGATGCTCCTTACAGCATCCTCATT
GACAATGTGGAGAAACAATCTGGTAGCTTGTACTCTGATTGGGATCTCCT
CCCTCCAAGACCATCNAGGATCCTGACGCCAAGAAACCTGAAGA