FC876325

Overview
NameFC876325
Unique NameFC876325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_CHLT3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=gpmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES+WN++N FTG  DV LT+KGV+EA  AG+  +   +  D+ YTS L RA  T  LA+             NE +               Q IPV   W+LNER YG
Sbjct:    4 LVLLRHGESVWNKENRFTGWKDVDLTEKGVQEAKRAGEFMKKEGLDFDIAYTSVLKRAIRTLNLAL-------------NEMD--------------LQWIPVNKTWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_TREDE (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Treponema denticola GN=gpmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 46/115 (40.00%), Postives = 57/115 (49.57%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+LVRHGES WN+ NLFTG  DV L++KGVEEA E G  +       D+ YTS L RA  T    +               S+  R W            +PV+  W+LNER YG
Sbjct:    3 LVLVRHGESEWNKLNLFTGWTDVDLSEKGVEEAKEGGTYLKKEGFDFDICYTSYLKRAIHTLNYIL---------------SQMDREW------------LPVIKTWKLNERHYG 90          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRS2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus suis (strain 98HAH33) GN=gpmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D+ +TS L RA  T  LA+                           E   +  +PV  +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIKTTNLAL---------------------------EAADQLWVPVEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRMU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus mutans GN=gpmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L+++G ++AI+AGK I  ++I  D+ +TS L RA  T  LA+               S+Q   W            +PV  +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEEGTQQAIDAGKLIKEADIKFDLAFTSVLTRAIKTTNLAL-------------EYSDQ--LW------------VPVEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRA5 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus agalactiae serotype V GN=gpmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D+ +TS L RA  T  LA+                           E   +  +PV  +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIQAAGIEFDLAFTSVLKRAIKTTNLAL---------------------------EAADQLWVPVEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRA3 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus agalactiae serotype III GN=gpmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D+ +TS L RA  T  LA+                           E   +  +PV  +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIQAAGIEFDLAFTSVLKRAIKTTNLAL---------------------------EAADQLWVPVEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STRA1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Streptococcus agalactiae serotype Ia GN=gpmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+  RHGES WN+ NLFTG  DV L++KG ++AI+AGK I  + I  D+ +TS L RA  T  LA+                           E   +  +PV  +W+LNER YG
Sbjct:    4 LVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIQAAGIEFDLAFTSVLKRAIKTTNLAL---------------------------EAADQLWVPVEKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_PARL1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=gpmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQI 601
            L+LVRHG+S WN+KNLFTG  D  LT++G+EEA EAG+ I    +  D+ YTSAL RAQ T  + + +  +  + II  NE+   R +  +
Sbjct:    5 LVLVRHGQSEWNKKNLFTGWRDPGLTEQGMEEAREAGQAIKAKGLVFDVAYTSALSRAQETNRIVLEELGQGDIEII-ENEALNERDYGDL 94          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_DIAST (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Diaphorobacter sp. (strain TPSY) GN=gpmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 44/115 (38.26%), Postives = 56/115 (48.70%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN +N FTG  DV LT  G+E+A  AG+  +      D+ YTS L RA  T               + H   E  RTW            +PV  +W+LNER YG
Sbjct:    4 LVLIRHGESTWNLENRFTGWTDVDLTPTGIEQAKNAGRLLKAEGYEFDLAYTSVLKRATRT---------------LWHCLDEMDRTW------------LPVEHSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_ACISJ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Acidovorax sp. (strain JS42) GN=gpmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 44/115 (38.26%), Postives = 56/115 (48.70%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN +N FTG  DV LT  G+E+A  AG+  +      D+ YTS L RA  T               + H   E  RTW            +PV  +W+LNER YG
Sbjct:    4 LVLIRHGESTWNLENRFTGWTDVDLTPTGIEQAKNAGRLLKAEGYDFDLAYTSVLKRATRT---------------LWHCLDEMDRTW------------LPVEHSWRLNERHYG 91          
The following BLAST results are available for this feature:
BLAST of FC876325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
GPMA_CHLT35.459e-1240.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_TREDE7.130e-1240.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRS27.130e-1238.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRMU7.130e-1239.132,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRA57.130e-1238.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRA37.130e-1238.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STRA17.130e-1238.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_PARL17.130e-1245.052,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_DIAST7.130e-1238.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_ACISJ7.130e-1238.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003D07EF DevOvary1 Citrus clementina cDNA clone C32003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876325 ID=FC876325; Name=FC876325; organism=Citrus clementina; type=EST; length=677bp
ATGAAAAAGATATTTCTGATGCTCATATGCTGCTTGAGTTAACACTGATT
GAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATCCAAT
CGACTTCTTAACACCTCTGGCACTCACCATGAACTTGGAAATATTAGGGT
GCATTTGATTCCAAAAAGTTTCAAGCTTAATATTGAATTGTCAAGAAACA
GGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCACAGCT
TCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACGACAC
CAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTTCGAC
ATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGTGTTGAT
GTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAGGCTGGAAAGAG
AATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATTCGCG
CGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAAGGTG
CCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTCAGAT
CTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCTTGGC
AATTGAATGAAAGAATGTATGGGGAAT
back to top