FC876325

Overview
NameFC876325
Unique NameFC876325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_PROAC (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Propionibacterium acnes GN=gpmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 49/117 (41.88%), Postives = 59/117 (50.43%), Query Frame = 2
Query:  329 AALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            A LIL+RHGES WN KNLFTG VDV L +KG  EA  A   +   N+  D+++TS L RA  TA LA+    R                W            IPV  +W+LNER YG
Sbjct:    3 AKLILLRHGESEWNSKNLFTGWVDVDLNEKGEGEARHAADLLKQENLLPDIVHTSLLRRAIHTAYLALDGCDRH---------------W------------IPVHRSWRLNERHYG 92          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_COPPD (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=gpmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 42/115 (36.52%), Postives = 57/115 (49.57%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            ++++RHGES WN+ NLFTG  DV L+ +GVEEAI AGK++       D+ +TS L RA  T  L + Q     +P+  H                           W+LNER YG
Sbjct:    4 VVMIRHGESEWNKLNLFTGWTDVDLSDRGVEEAIWAGKKLKEEGYTFDVAFTSVLKRAIKTLNLVLEQMNLDWIPVYKH---------------------------WRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_BART1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=gpmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQ 532
            L+L+RHG+S WN KNLFTG  D  LT+KG  EAI AGK++  + +  D+ YTSAL RAQ TA   + Q
Sbjct:    5 LVLIRHGQSEWNLKNLFTGWKDPDLTEKGHAEAIAAGKKLKETGVKFDIAYTSALQRAQKTAQHILEQ 72          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_BARBK (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=gpmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHN 568
            L+LVRHG+S WN KNLFTG  D  LT+KG  EAI AGK +  + +  D+ YTSAL RAQ TA   + Q  +  + +I ++
Sbjct:    5 LVLVRHGQSEWNIKNLFTGWKDPDLTEKGRTEAITAGKNLKKAGLKFDIAYTSALQRAQKTAQHILEQMAQPDLQLIKNS 84          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_ALHEH (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 45/115 (39.13%), Postives = 58/115 (50.43%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISN--IPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHG+S+WN++N FTG  DV LT+KG EEA  AG+ +    +  D  YTS L RA  T  + +                E  + W            IPV  AWQLNER YG
Sbjct:    4 LVLLRHGQSIWNQENRFTGWHDVDLTEKGREEAQAAGQLMKRHGLRFDYAYTSVLKRAIRTLWIGL---------------DELDQMW------------IPVTKAWQLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STAHJ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gpmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 45/116 (38.79%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYGE 676
            LIL RHG+S WN KNLFTG  DV L+++G  EAI +G+++  + I +D+ +TS L RA  T    +              ES+Q   W            IPV  +W+LNER YG+
Sbjct:    4 LILCRHGQSEWNAKNLFTGWEDVQLSEQGRNEAITSGRKLKENGIEIDVAFTSLLTRALETTQFLLA-------------ESDQE--W------------IPVHKSWRLNERHYGK 92          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_GEOMG (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=gpmA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 44/115 (38.26%), Postives = 56/115 (48.70%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES+WN +N FTG  DV L++KG+EEAI AG+ +       D+ YTS L RA  T  L +                E    W            IP    W+LNER YG
Sbjct:    4 LVLLRHGESVWNRENRFTGWTDVGLSEKGIEEAISAGRTLKEEGFVFDVAYTSVLKRAIKTLWLVL---------------EEMDLMW------------IPEYRHWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_TROWT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Tropheryma whipplei (strain Twist) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHG SLWN++NLFTG VDV L++ G +EA  AG+  R +N   D+++TS L R+  TA +A+                E  R W            +P   +W+LNER YG
Sbjct:    4 LVLLRHGNSLWNQENLFTGWVDVRLSELGEKEAKTAGQLLREANRYPDVLFTSLLTRSIQTAHIALM---------------EIDRVW------------LPTFRSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_TROW8 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Tropheryma whipplei (strain TW08/27) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 44/115 (38.26%), Postives = 62/115 (53.91%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHG SLWN++NLFTG VDV L++ G +EA  AG+  R +N   D+++TS L R+  TA +A+                E  R W            +P   +W+LNER YG
Sbjct:    4 LVLLRHGNSLWNQENLFTGWVDVRLSELGEKEAKTAGQLLREANRYPDVLFTSLLTRSIQTAHIALM---------------EIDRVW------------LPTFRSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_BIFLO (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bifidobacterium longum GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHG+S WN+ N FTG VDVPLT++G  EA   G+ +   N+  D+++TS L RA  TA +A+                   R W            IPV   W+LNER YG
Sbjct:    5 LVLLRHGQSAWNKTNQFTGWVDVPLTEQGEAEAKRGGELLKEKNVLPDIVFTSLLRRAINTANIAL---------------DAADRLW------------IPVQRDWRLNERHYG 92          
The following BLAST results are available for this feature:
BLAST of FC876325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
GPMA_PROAC1.588e-1141.882,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_COPPD1.588e-1136.522,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BART11.588e-1154.412,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BARBK1.588e-1148.752,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_ALHEH1.588e-1139.132,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STAHJ2.075e-1138.792,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_GEOMG2.075e-1138.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_TROWT2.709e-1138.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_TROW82.709e-1138.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BIFLO2.709e-1138.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionC32003D07EF DevOvary1 Citrus clementina cDNA clone C32003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876325 ID=FC876325; Name=FC876325; organism=Citrus clementina; type=EST; length=677bp
ATGAAAAAGATATTTCTGATGCTCATATGCTGCTTGAGTTAACACTGATT
GAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATCCAAT
CGACTTCTTAACACCTCTGGCACTCACCATGAACTTGGAAATATTAGGGT
GCATTTGATTCCAAAAAGTTTCAAGCTTAATATTGAATTGTCAAGAAACA
GGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCACAGCT
TCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACGACAC
CAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTTCGAC
ATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGTGTTGAT
GTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAGGCTGGAAAGAG
AATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATTCGCG
CGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAAGGTG
CCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTCAGAT
CTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCTTGGC
AATTGAATGAAAGAATGTATGGGGAAT
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