FC876325

Overview
NameFC876325
Unique NameFC876325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_BIFLI (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHG+S WN+ N FTG VDVPLT++G  EA   G+ +   N+  D+++TS L RA  TA +A+                   R W            IPV   W+LNER YG
Sbjct:    5 LVLLRHGQSAWNKTNQFTGWVDVPLTEQGEAEAKRGGELLKEKNVLPDIVFTSLLRRAINTANIAL---------------DAADRLW------------IPVQRDWRLNERHYG 92          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_BIFLD (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bifidobacterium longum (strain DJO10A) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRIS--NIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHG+S WN+ N FTG VDVPLT++G  EA   G+ +   N+  D+++TS L RA  TA +A+                   R W            IPV   W+LNER YG
Sbjct:    5 LVLLRHGQSAWNKTNQFTGWVDVPLTEQGEAEAKRGGELLKEKNVLPDIVFTSLLRRAINTANIAL---------------DAADRLW------------IPVQRDWRLNERHYG 92          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_ACIAC (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 43/115 (37.39%), Postives = 56/115 (48.70%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN +N FTG  DV LT  G+E+A  AG+  +      D+ +TS L RA  T               + H   E  RTW            +PV  +W+LNER YG
Sbjct:    4 LVLIRHGESTWNLENRFTGWTDVDLTPTGIEQAKTAGRLLKAEGYEFDLAFTSVLKRATRT---------------LWHVLDEMDRTW------------LPVEHSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA2_BACC1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 2 OS=Bacillus cereus (strain ATCC 10987) GN=gpmA2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.709e-11
Identity = 44/115 (38.26%), Postives = 55/115 (47.83%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHG+S WN +N FTG  DV L+ KG+EEA EAG  +  S    D+ YTS L RA  T  + +                E    W            IPV   W+LNER YG
Sbjct:    4 LVLIRHGQSEWNVENRFTGWTDVDLSSKGLEEAREAGVMLKASGFSFDIAYTSVLRRAMRTLWITL---------------EEMDLMW------------IPVYKTWKLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_POLNS (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Polynucleobacter necessarius (strain STIR1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 45/116 (38.79%), Postives = 59/116 (50.86%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQS-IPVVTAWQLNERMYG 673
            L+L+RHGES WN +N FTG  DV LT KG E+A+ AG+ +  +    D+ YTS L RA  T                          W+    +DTM    +PVV +W+LNER YG
Sbjct:    4 LVLIRHGESAWNLENRFTGWADVDLTPKGAEQALAAGENLKKAGYEFDVAYTSVLRRAIRTL-------------------------WNV---QDTMDLMWLPVVHSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_PELPB (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 46/115 (40.00%), Postives = 56/115 (48.70%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN +N FTG  D+ LT +G EEA  AGK  R      D+ YTS L RA  T                          WS + + D M   IPV  +W+LNER YG
Sbjct:    4 LVLLRHGESQWNRENRFTGWYDIDLTDQGREEAANAGKLLREGGFVFDVAYTSVLKRAIRT-------------------------LWSVLDAMDLM--WIPVFKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_METRJ (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  326 EAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPII 559
            E  L+LVRHG+S WN +NLFTG  D  LT++GV EA  AG+ +       D+ +TSALIRAQ T  L + +    ++PI+
Sbjct:    2 ERLLVLVRHGQSEWNLRNLFTGWRDPDLTERGVAEARAAGRGLKRDGYGFDVAFTSALIRAQRTCALVLEEMGLSEIPIL 81          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_LEPCP (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 43/115 (37.39%), Postives = 56/115 (48.70%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN +N FTG  DV LT  GV +A +AG+ +       D+ YTS L RA  T               + H   +  RTW            +PV  +W+LNER YG
Sbjct:    4 LVLIRHGESTWNLENRFTGWTDVELTPTGVSQAQQAGRLLKEGGYEFDIAYTSVLKRAIWT---------------LWHALDQMDRTW------------LPVAHSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_HAEDU (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Haemophilus ducreyi GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 44/116 (37.93%), Postives = 58/116 (50.00%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYGE 676
            L+ +RHG S WN KNLFTG  DV LT++GVEEA  AG+++  +    D+ +TS L RA  T  + +                E  + W            IP V  W+LNER YGE
Sbjct:    3 LVFIRHGFSEWNAKNLFTGWRDVNLTERGVEEAKAAGQKLLAAGYEFDIAFTSVLTRAIKTCNIVL---------------EESNQLW------------IPQVKHWRLNERHYGE 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_COREF (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Corynebacterium efficiens GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 47/115 (40.87%), Postives = 57/115 (49.57%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL+RHG+S WN  N FTG VDV LT  G  EA   G+ +  +N+  D++YTS L RA  TA LA+                   R W            IPVV  W+LNER YG
Sbjct:    8 LILLRHGQSAWNASNQFTGWVDVDLTTIGEAEAKRGGELLVENNVLPDVVYTSLLRRAIRTANLAL---------------DAADRHW------------IPVVRDWRLNERHYG 95          
The following BLAST results are available for this feature:
BLAST of FC876325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
GPMA_BIFLI2.709e-1138.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BIFLD2.709e-1138.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_ACIAC2.709e-1137.392,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA2_BACC12.709e-1138.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_POLNS3.539e-1138.792,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_PELPB3.539e-1140.002,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METRJ3.539e-1146.252,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_LEPCP3.539e-1137.392,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_HAEDU3.539e-1137.932,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_COREF3.539e-1140.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionC32003D07EF DevOvary1 Citrus clementina cDNA clone C32003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876325 ID=FC876325; Name=FC876325; organism=Citrus clementina; type=EST; length=677bp
ATGAAAAAGATATTTCTGATGCTCATATGCTGCTTGAGTTAACACTGATT
GAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATCCAAT
CGACTTCTTAACACCTCTGGCACTCACCATGAACTTGGAAATATTAGGGT
GCATTTGATTCCAAAAAGTTTCAAGCTTAATATTGAATTGTCAAGAAACA
GGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCACAGCT
TCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACGACAC
CAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTTCGAC
ATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGTGTTGAT
GTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAGGCTGGAAAGAG
AATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATTCGCG
CGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAAGGTG
CCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTCAGAT
CTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCTTGGC
AATTGAATGAAAGAATGTATGGGGAAT
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