FC876325

Overview
NameFC876325
Unique NameFC876325
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_CLOPH (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 45/115 (39.13%), Postives = 58/115 (50.43%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISN--IPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN++NLFTG +DV L++ G  EA  AG  +       D+ YTS L RA  T  LA+                E  R W            +PVV +W+LNER YG
Sbjct:    3 LVLLRHGESEWNKENLFTGWMDVDLSETGKAEAASAGITLKQKGYDFDVCYTSYLKRAIHTLNLAL---------------DEMDRVW------------LPVVKSWKLNERHYG 90          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_BRAJA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bradyrhizobium japonicum GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 2
Query:  323 NEAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVP 553
            +E  L+LVRHG+S WN KNLFTG  D  LT++GV EA EAG+++    +  D+ YTS L RAQ T  L + +  ++ +P
Sbjct:    2 SERLLVLVRHGQSEWNLKNLFTGWKDPDLTEQGVAEAREAGRKLKAQGLVFDVAYTSVLTRAQHTLDLILGELGQKGLP 80          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_BACWK (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bacillus weihenstephanensis (strain KBAB4) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHG+SLWN +N FTG  DV L+K G+ EA EAG   + +    D+ YTS L RA  T              I++H   E   TW            +P+  +W+LNER YG
Sbjct:    4 LVLIRHGQSLWNLENRFTGWTDVDLSKNGLSEAREAGTILKKNGYTFDVAYTSVLKRAIRTLW------------IVLH---EMDLTW------------VPIHNSWKLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_ARTCA (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 47/115 (40.87%), Postives = 58/115 (50.43%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL+RHG S WN KNLFTG VDV L  +G  EA   G+ +  +NI  D++YTS L RA  TA +A+                +  R W            IPV   W+LNER YG
Sbjct:    5 LILLRHGHSEWNAKNLFTGWVDVDLNDQGRAEAARGGELLVENNILPDVLYTSLLKRAINTANIAL---------------DKADRGW------------IPVKRDWRLNERHYG 92          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_STACT (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Staphylococcus carnosus (strain TM300) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRISN--IPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            LIL RHG+S+WN +NLFTG  DV L+ +GVEEA  +G R+    I +D+ +TS L RA  T     T H   +               +Q+F        +P+  +W+LNER YG
Sbjct:    4 LILCRHGQSVWNAENLFTGWTDVDLSDQGVEEATTSGDRLKQEGIEIDVAFTSVLQRAIKT-----TYHLLERS--------------NQLF--------VPLYKSWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_CUPTR (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 44/115 (38.26%), Postives = 57/115 (49.57%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHGES WN +N FTG VDV LT+ G  +A +AGK +  + +  D+ YTS L RA  T               + H + E    W            IPV   W+LNER YG
Sbjct:    4 LVLIRHGESTWNLENRFTGWVDVDLTETGAAQARQAGKLLKEAGMGFDVAYTSVLKRAIRT---------------LWHVQDEMDLMW------------IPVRNEWRLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_BACC4 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bacillus cereus (strain B4264) GN=gpmA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGK--RISNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+L+RHG+SLWN +N FTG  DV L++ G+ EA EAG   + +    DM YTS L RA  T              I++H   E   TW            +P+  +W+LNER YG
Sbjct:    4 LVLIRHGQSLWNLENRFTGWTDVDLSENGLSEAREAGAILKKNGYTFDMAYTSVLKRAIRTLW------------IVLH---EMDLTW------------VPIHKSWKLNERHYG 91          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_METS4 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Methylobacterium sp. (strain 4-46) GN=gpmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  326 EAALILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPII 559
            E  L+L RHG+S WN KNLFTG  D  LT+ G+ EA  AG+R+    I  D+ +TSAL RAQ TA L + +  +  +P I
Sbjct:    2 ERLLVLARHGQSEWNLKNLFTGWRDPDLTEVGIAEARAAGRRLKAKGIRFDICFTSALTRAQRTAALILEELGQPDLPTI 81          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_HAES2 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Haemophilus somnus (strain 2336) GN=gpmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 43/115 (37.39%), Postives = 57/115 (49.57%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+ +RHG S WN KNLFTG  DV LT++G+EEA  AGK++  +    D+ +TS L RA  T  + +                E  + W            IP V  W+LNER YG
Sbjct:    3 LVFIRHGFSEWNAKNLFTGWRDVNLTERGIEEAKAAGKKLLEAGYEFDIAFTSVLTRAIKTCNIVL---------------EESNQLW------------IPQVKHWRLNERHYG 90          
BLAST of FC876325 vs. ExPASy Swiss-Prot
Match: GPMA_HAES1 (2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Haemophilus somnus (strain 129Pt) GN=gpmA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 43/115 (37.39%), Postives = 57/115 (49.57%), Query Frame = 2
Query:  335 LILVRHGESLWNEKNLFTGCVDVPLTKKGVEEAIEAGKRI--SNIPVDMIYTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQARTWSQIFSEDTMKQSIPVVTAWQLNERMYG 673
            L+ +RHG S WN KNLFTG  DV LT++G+EEA  AGK++  +    D+ +TS L RA  T  + +                E  + W            IP V  W+LNER YG
Sbjct:    3 LVFIRHGFSEWNAKNLFTGWRDVNLTERGIEEAKAAGKKLLEAGYEFDIAFTSVLTRAIKTCNIVL---------------EESNQLW------------IPQVKHWRLNERHYG 90          
The following BLAST results are available for this feature:
BLAST of FC876325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
GPMA_CLOPH3.539e-1139.132,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BRAJA3.539e-1146.842,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BACWK3.539e-1138.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_ARTCA3.539e-1140.872,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_STACT4.622e-1138.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_CUPTR4.622e-1138.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_BACC44.622e-1138.262,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_METS46.036e-1147.502,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_HAES26.036e-1137.392,3-bisphosphoglycerate-dependent phosphoglycerate... [more]
GPMA_HAES16.036e-1137.392,3-bisphosphoglycerate-dependent phosphoglycerate... [more]

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Properties
Property NameValue
Genbank descriptionC32003D07EF DevOvary1 Citrus clementina cDNA clone C32003D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876325 ID=FC876325; Name=FC876325; organism=Citrus clementina; type=EST; length=677bp
ATGAAAAAGATATTTCTGATGCTCATATGCTGCTTGAGTTAACACTGATT
GAATGTCTGCACAGGTATTTCACCAAGCTATGGGGACTCTCCAATCCAAT
CGACTTCTTAACACCTCTGGCACTCACCATGAACTTGGAAATATTAGGGT
GCATTTGATTCCAAAAAGTTTCAAGCTTAATATTGAATTGTCAAGAAACA
GGAATTTTAGATTTGGGAAGAAGAATTTTGGCATAATTCAGGCCACAGCT
TCTCAAACTTCAGTTATTGAATCTGCTTCATCTCCCTCAAATCACGACAC
CAGTGACTCCAAAAAGAAATCAAATGAAGCAGCTTTGATACTGGTTCGAC
ATGGTGAGTCTCTCTGGAATGAAAAGAACCTGTTTACAGGTTGTGTTGAT
GTGCCATTAACCAAGAAGGGTGTAGAAGAGGCAATTGAGGCTGGAAAGAG
AATAAGCAACATACCTGTCGACATGATATATACATCAGCACTAATTCGCG
CGCAGATGACTGCTATGCTCGCCATGACACAGCACCGACGCAGGAAGGTG
CCTATCATTATGCATAATGAAAGTGAACAGGCAAGGACCTGGAGTCAGAT
CTTCAGCGAAGACACCATGAAGCAGTCCATTCCCGTTGTAACAGCTTGGC
AATTGAATGAAAGAATGTATGGGGAAT
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