FC876332

Overview
NameFC876332
Unique NameFC876332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:65..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: PEPT1_DERFA (Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 51/153 (33.33%), Postives = 73/153 (47.71%), Query Frame = 2
Query:  212 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYL-------GLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDC--DHEC 643
            F  FKK FNK YA+ EE +    + + N   + +  + +  A   +   SDL+  EF+  YL        L+ +  L  +     I   N +P++ D R    V P++ QG CGSCW+FS   A E A        + LSEQ+LVDC   H C
Sbjct:   26 FEEFKKAFNKNYATVEEEE----VARKNFLESLKYVEANKGA---INHLSDLSLDEFKNRYLMSAEAFEQLKTQFDLNAETSACRINSVN-VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQHGC 170          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: PEPT1_DERPT (Peptidase 1 OS=Dermatophagoides pteronyssinus GN=DERP1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 47/151 (31.13%), Postives = 71/151 (47.02%), Query Frame = 2
Query:  212 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRR-----KLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDC--DHEC 643
            F  +KK FNK+YA+ E+ +     F  ++       K   S    +   SDL+  EF+  +L         K +   +A+        + PA+ D R+   V P++ QG CGSCW+FS   A E A      + + L+EQ+LVDC   H C
Sbjct:   26 FEEYKKAFNKSYATFEDEEAARKNFLESV-------KYVQSNGGAINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQHGC 169          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVN (Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 54/186 (29.03%), Postives = 82/186 (44.09%), Query Frame = 2
Query:  173 ESTNNDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKL----DPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILP----------------TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKL-VSLSEQQLVDCDHE---CDPEEP 658
            ES  +++  A   F   K+  NK Y + +E  +RF  FK    +  +  ++      +    V Q+SD +  EF   +   ++ L +P D     I+P                + D P   D+R K    P KDQG+CGSCW+F+  G  E        ++ +S SEQQ+VDC  E   CD   P
Sbjct:  150 ESMQDNIKYASKFFKYMKEN-NKKYENMDEQLQRFENFKIRYMKTQKHNEMVGKNGLTYVQKVNQYSDFSKEEFDNYF---KKLLSVPMDLKSKYIVPLKKHLANTNLISVDNKSKDFPDSRDYRSKFNFLPPKDQGNCGSCWAFAAIGNFEYLYVHTRHEMPISFSEQQMVDCSTENYGCDGGNP 331          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: CYSP_PLAVS (Cysteine proteinase OS=Plasmodium vivax (strain Salvador I) PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 48/174 (27.59%), Postives = 79/174 (45.40%), Query Frame = 2
Query:  212 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTN---------------------DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGK-LVSLSEQQLVDC---DHECDPEEP 658
            F  F  K+ ++Y    E   ++  FK N  +  +  + +      V QFSD +  +F   +   R+ + +P    +  ++P +                     D+P   D+REKG V   KDQG CGSCW+F++ G +E        K +++LSEQ++VDC   +  CD   P
Sbjct:  237 FFNFMNKYKRSYKDINEQMEKYKNFKMNYLKIKKHNETNQMYKMKVNQFSDYSKKDFESYF---RKLVPIPDHLKKKYVVPFSSMNNGKGKNVVTSSSGANLLADVPEILDYREKGIVHEPKDQGLCGSCWAFASVGNVECMYAKEHNKTILTLSEQEVVDCSKLNFGCDGGHP 407          
BLAST of FC876332 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 47/146 (32.19%), Postives = 69/146 (47.26%), Query Frame = 2
Query:  212 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYL---GLRRKLRLPKDADQ---APILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDC 631
            F  FKK FNK YA+ E+ +     F  +L       K   S    +   SDL+  EF+  +L       +L+   D +    A  + +  LP++ D R    V P++ QG CGSCW+FS   + E A        + L+EQ+LVDC
Sbjct:   26 FEEFKKAFNKTYATPEKEEVARKNFLESL-------KYVESNKGAINHLSDLSLDEFKNQFLMNANAFEQLKTQFDLNAETYACSINSVSLPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDC 164          
The following BLAST results are available for this feature:
BLAST of FC876332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
PEPT1_DERFA3.814e-1333.33Peptidase 1 OS=Dermatophagoides farinae GN=DERF1 P... [more]
PEPT1_DERPT3.229e-1231.13Peptidase 1 OS=Dermatophagoides pteronyssinus GN=D... [more]
CYSP_PLAVN4.217e-1229.03Cysteine proteinase OS=Plasmodium vinckei PE=3 SV=... [more]
CYSP_PLAVS7.194e-1227.59Cysteine proteinase OS=Plasmodium vivax (strain Sa... [more]
PEPT1_EURMA3.570e-1132.19Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32003E03EF DevOvary1 Citrus clementina cDNA clone C32003E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876332 ID=FC876332; Name=FC876332; organism=Citrus clementina; type=EST; length=680bp
GACGCTTCTATTGATATCAGCATTGTCTAAAAACATGGGATCTAAAACAG
TAGTTTTCTTTCTGGTCTCTCTCGTCGTCGTCTCCGCCGTTTCATCAGGG
ACGTTGATCGACGATGTTGATCAGCTGATCAGGCAAGTAACGGACGGCGG
TGACGAGATCCTAAGCCACCACGAGAGCACCAACAACGACCTCTTGGGCG
CAGAGCACCACTTCTCCCTATTCAAGAAGAAGTTCAATAAAGCGTACGCT
TCGCAGGAGGAGCACGACCGTAGGTTCACTATTTTCAAGGCCAACTTGCG
ACGCGCCGCGCGTCGCCAGAAGCTCGACCCGAGCGCCACCCACGGCGTCA
CTCAGTTCTCCGACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGGC
CTCAGGAGGAAGCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCGATCTT
GCCTACGAATGATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTG
TAGGCCCTGTTAAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGT
ACAACAGGGGCCTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGT
GAGCCTCAGTGAGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTG
AGGAACCAGGTTCTTGTGATTCTGGGATGC
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