FC876334

Overview
NameFC876334
Unique NameFC876334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876334 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 45/160 (28.12%), Postives = 83/160 (51.88%), Query Frame = 2
Query:  161 PGPTPYPVIGNLLELG-DKPHKSLAKLAKIHGP--IMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFG--MPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFGTTLNLISNTIF 625
            PGP  +P+IG+L+++    PH+ L  LA++HG   +MS   G    V+ S   +A+E+L +    F NR +  +        FG  + + P    WR LR+I ++H F+ R++ A++  R+  +  +L  +Q+   +   + + +   G  LN I  ++F
Sbjct:   80 PGPKGWPIIGSLMDMSVGLPHRKLESLARLHGAKQLMSFSLGCTPAVITSDPEVARELLTSPH--FANRPLKQSAQ---QLLFGRAIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAMLDDIQKEYHSKGVVRVRRHLQGAALNNIMGSVF 234          
BLAST of FC876334 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 42/113 (37.17%), Postives = 59/113 (52.21%), Query Frame = 2
Query:  152 RLPPGPTPYPVIGNLLELGDK-PHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRT---IPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSR 478
            +LPPGP P P+ GN L++GD   H++L  LAK  G I  L+ GQ   VV SS  +AKE+L  Q   F +RT   + D     G     M +      WR +R+I     F+++
Sbjct:   32 KLPPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQ---DMVFTVYGEHWRKMRRIMTVPFFTNK 141          
BLAST of FC876334 vs. ExPASy Swiss-Prot
Match: C71BF_ARATH (Cytochrome P450 71B15 OS=Arabidopsis thaliana GN=CYP71B15 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 43/180 (23.89%), Postives = 86/180 (47.78%), Query Frame = 2
Query:   98 ILVVALNYFSRGFKSGSRRLPPGPTPYPVIGNLLELGDKPHKSLAKLAKIHGPIMSLKFGQVTTVVFSSAAMAKEILQNQDTSFCNRTIPDAIYAHGHHEFGMPWLPVATLWRNLRKICNSHAFSSRQLDANQHLRRKKIQDLLAYVQENCRAGTAIHIGQAAFGTTLNLISNTIFSIDL 637
            +L+  +  F    K    +LPPGP   P+IGNL +      ++   LA+++GP+  L++G V  V  SS   A+E+L+  D   C+R     + A  ++   +   P    W  +RK+     FS ++L + +++  ++    +  + E     + +++ +A F    N++    + I+L
Sbjct:    9 VLLPLILIFLNVLKPSKYKLPPGPKKLPIIGNLHQRRTLHPRNRRNLAEMYGPVALLQYGFVPVVAISSKEAAEEVLKINDLECCSRPEAAGMRATFYNFKDIGMAPFGDEWSLMRKLSVVELFSVKKLQSFKYIIEEENNLCVKKLSEFATRQSPVNLERAIFTLVGNIVCRIGYGINL 188          
The following BLAST results are available for this feature:
BLAST of FC876334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
C78A4_PINRA2.241e-1128.13Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
TCMO_GLYEC4.993e-1137.17Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
C71BF_ARATH4.993e-1123.89Cytochrome P450 71B15 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC32003E06EF DevOvary1 Citrus clementina cDNA clone C32003E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876334 ID=FC876334; Name=FC876334; organism=Citrus clementina; type=EST; length=704bp
GGACACCTGAATTTGGTGTTTACAAGAGCTTCAACAAAAGAGAGCGAGAT
TAAAGATGGATATGGTAAGCTGCGTACCATGGCTTCTATTCTCGTGGATT
TTGGTCGTCGCTTTAAATTACTTTTCAAGAGGATTCAAATCTGGATCCAG
AAGGCTTCCACCGGGACCGACGCCTTATCCGGTGATCGGAAACCTCCTGG
AACTCGGCGACAAACCTCACAAGTCACTTGCTAAACTTGCCAAGATTCAT
GGCCCCATAATGAGTCTAAAATTTGGCCAGGTGACCACAGTTGTCTTTTC
TTCTGCAGCCATGGCCAAAGAAATCCTTCAAAATCAAGACACATCTTTCT
GTAATCGAACGATCCCAGACGCAATCTACGCCCACGGCCATCATGAATTC
GGGATGCCCTGGCTGCCTGTGGCGACACTGTGGAGAAATCTTCGAAAAAT
ATGCAACTCACATGCTTTCTCTAGTCGCCAACTCGATGCCAATCAGCACC
TTCGGCGTAAGAAAATCCAAGATCTTCTAGCTTATGTCCAAGAAAATTGC
CGTGCAGGTACAGCAATACATATTGGCCAAGCTGCTTTCGGCACTACGCT
TAATTTGATATCCAACACAATTTTTTCTATTGACTTGGCTGATCCCNACA
TCAAAACTGCGCGAGAGTTTAAGCAACAAATTGGGGTATGATGGAAGAAG
CTGG
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