FC876351

Overview
NameFC876351
Unique NameFC876351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_MYCSK (Adenosylhomocysteinase OS=Mycobacterium sp. (strain KMS) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.428e-27
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1
Query:  145 KSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +S +G ++KV DLS A+FGR EI LAE EMPGLMA R E+    P KG +I+GSLHMT+QTAVLIETL +LGAEVRW SCNIFSTQ
Sbjct:   11 ESRNGIDYKVADLSLAEFGRKEIRLAEHEMPGLMALRREYAEVAPLKGARISGSLHMTVQTAVLIETLVSLGAEVRWASCNIFSTQ 96          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_MYCSJ (Adenosylhomocysteinase OS=Mycobacterium sp. (strain JLS) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.428e-27
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1
Query:  145 KSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +S +G ++KV DLS A+FGR EI LAE EMPGLMA R E+    P KG +I+GSLHMT+QTAVLIETL +LGAEVRW SCNIFSTQ
Sbjct:   11 ESRNGIDYKVADLSLAEFGRKEIRLAEHEMPGLMALRREYAEVAPLKGARISGSLHMTVQTAVLIETLVSLGAEVRWASCNIFSTQ 96          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_LEPBL (Adenosylhomocysteinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.428e-27
Identity = 61/90 (67.78%), Postives = 68/90 (75.56%), Query Frame = 1
Query:  133 LSVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +S      G  +KVKDLSQA++GR EI LAE EMPGLMA R E+   +P  G +I GSLHMTIQTAVLIETLT LGAEVRW SCNIFSTQ
Sbjct:    1 MSATTQEKGLNYKVKDLSQAEWGRQEIILAEKEMPGLMALRQEYKGKKPLAGARIAGSLHMTIQTAVLIETLTELGAEVRWSSCNIFSTQ 90          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_LEPBJ (Adenosylhomocysteinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.428e-27
Identity = 61/90 (67.78%), Postives = 68/90 (75.56%), Query Frame = 1
Query:  133 LSVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +S      G  +KVKDLSQA++GR EI LAE EMPGLMA R E+   +P  G +I GSLHMTIQTAVLIETLT LGAEVRW SCNIFSTQ
Sbjct:    1 MSATTQEKGLNYKVKDLSQAEWGRQEIILAEKEMPGLMALRQEYKGKKPLAGARIAGSLHMTIQTAVLIETLTELGAEVRWSSCNIFSTQ 90          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_METNO (Adenosylhomocysteinase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.783e-27
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1
Query:  154 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            S +++ V+D+  ADFGR EI +AE EMPGLMA R E+  SQP KG KI GSLHMTIQTAVLIETL ALGA++RW SCNI+STQ
Sbjct:    3 SAQDYIVRDIGLADFGRKEIAIAETEMPGLMAVRREYAASQPLKGAKIAGSLHMTIQTAVLIETLKALGADIRWVSCNIYSTQ 85          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_AGRT5 (Adenosylhomocysteinase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.783e-27
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 1
Query:  160 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +++ V D++ A FGR E+++AE EMPGLM+CR EFG S+P KG +ITGSLHMTIQT VLIETL  LGAE+RW SCNIFSTQ
Sbjct:    5 KDYIVADINLAAFGRKELDIAETEMPGLMSCRKEFGESKPLKGARITGSLHMTIQTGVLIETLKELGAEIRWASCNIFSTQ 85          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_METCA (Adenosylhomocysteinase OS=Methylococcus capsulatus GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.553e-27
Identity = 61/89 (68.54%), Postives = 69/89 (77.53%), Query Frame = 1
Query:  136 SVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +V  +AS  + KV DLS A +GR EI +AE EMPGLMA R E+  +QP KG +I GSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQ
Sbjct:    3 AVANAASFDDHKVADLSLAGWGRKEIAIAETEMPGLMAIREEYRAAQPLKGARIAGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQ 91          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_LEPIN (Adenosylhomocysteinase OS=Leptospira interrogans GN=ahcY PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.864e-27
Identity = 61/90 (67.78%), Postives = 68/90 (75.56%), Query Frame = 1
Query:  133 LSVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +SV        +KVKDLSQA++GR EI LAE EMPGLMA R E+   +P  G +I GSLHMTIQTAVLIETLT LGAEVRW SCNIFSTQ
Sbjct:    1 MSVTTQEKDLSYKVKDLSQAEWGRQEIILAEKEMPGLMALRQEYKGKKPLAGARIAGSLHMTIQTAVLIETLTELGAEVRWSSCNIFSTQ 90          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_LEPIC (Adenosylhomocysteinase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ahcY PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.864e-27
Identity = 61/90 (67.78%), Postives = 68/90 (75.56%), Query Frame = 1
Query:  133 LSVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            +SV        +KVKDLSQA++GR EI LAE EMPGLMA R E+   +P  G +I GSLHMTIQTAVLIETLT LGAEVRW SCNIFSTQ
Sbjct:    1 MSVTTQEKDLSYKVKDLSQAEWGRQEIILAEKEMPGLMALRQEYKGKKPLAGARIAGSLHMTIQTAVLIETLTELGAEVRWSSCNIFSTQ 90          
BLAST of FC876351 vs. ExPASy Swiss-Prot
Match: SAHH_GRABC (Adenosylhomocysteinase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.864e-27
Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 1
Query:  127 MALSVQKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGVKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 402
            M  S+  +A   ++KV+D+  AD+GR EI +AE EMPGLMA R E+G S+P  G +I G LHMTIQTAVLIETLTALGA VRW SCNIFSTQ
Sbjct:    1 MESSMPDTAVAEDYKVRDIGLADWGRKEIRMAEDEMPGLMALREEYGNSKPLAGARIAGCLHMTIQTAVLIETLTALGATVRWSSCNIFSTQ 92          
The following BLAST results are available for this feature:
BLAST of FC876351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
SAHH_MYCSK4.428e-2768.60Adenosylhomocysteinase OS=Mycobacterium sp. (strai... [more]
SAHH_MYCSJ4.428e-2768.60Adenosylhomocysteinase OS=Mycobacterium sp. (strai... [more]
SAHH_LEPBL4.428e-2767.78Adenosylhomocysteinase OS=Leptospira borgpeterseni... [more]
SAHH_LEPBJ4.428e-2767.78Adenosylhomocysteinase OS=Leptospira borgpeterseni... [more]
SAHH_METNO5.783e-2768.67Adenosylhomocysteinase OS=Methylobacterium nodulan... [more]
SAHH_AGRT55.783e-2767.90Adenosylhomocysteinase OS=Agrobacterium tumefacien... [more]
SAHH_METCA7.553e-2768.54Adenosylhomocysteinase OS=Methylococcus capsulatus... [more]
SAHH_LEPIN9.864e-2767.78Adenosylhomocysteinase OS=Leptospira interrogans G... [more]
SAHH_LEPIC9.864e-2767.78Adenosylhomocysteinase OS=Leptospira interrogans s... [more]
SAHH_GRABC9.864e-2764.13Adenosylhomocysteinase OS=Granulibacter bethesdens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003G05EF DevOvary1 Citrus clementina cDNA clone C32003G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876351 ID=FC876351; Name=FC876351; organism=Citrus clementina; type=EST; length=404bp
GGCTCACACCCACTCTATCTCTCTCGCTTGTACAATCATTCACTTTGTTT
GGTTGGTTTCCAAAGAGAGAGTAGAGTGCCCTCTCTTCCTTCTTCCTTTT
AGATCTATCAATTCTATTAATAAGCCATGGCTTTGTCCGTCCAGAAATCC
GCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCGG
CCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCTT
GCCGCGCCGAGTTCGGCCCTTCACAGCCCTTCAAAGGAGTCAAGATCACC
GGTTCACTCCACATGACCATCCAGACCGCCGTCCTCATCGAGACCCTCAC
CGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACCC
AAGA
back to top