FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CLOTH (Diaminopimelate epimerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGND+I V+    T    + E A+K+ DR+FGIG+DG++  M      D+ MR+FNSDGSE EMCGN  RC  +++
Sbjct:    1 MRFTKMHGLGNDYIYVNCFEETVENPS-EVAKKVSDRHFGIGSDGLVLIMPSER-ADFKMRMFNSDGSEAEMCGNAIRCVGKYV 82          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CHRSD (Diaminopimelate epimerase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            LHF K HGLGNDF+++D   +   R+  E+  +L DR+ GIG D ++      + + D+  RIFN+DG+E E CGNG RCFARF+
Sbjct:    3 LHFTKMHGLGNDFVVID-LITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDFRYRIFNADGNEVENCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURXL (Diaminopimelate epimerase OS=Burkholderia xenovorans (strain LB400) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D    T+P  +TP Q   L DR+FG+GAD ++      V   D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURPP (Diaminopimelate epimerase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D    T+P  +TP Q   L DR+FG+GAD ++      V   D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RALEJ (Diaminopimelate epimerase OS=Ralstonia eutropha (strain JMP134) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D  +  +  +T EQ   L  R+FG+GAD ++        D D+  RIFN+DGSE E CGNG RCF RF+
Sbjct:    3 LQFTKMHGAGNDFVVLDGIHQ-KLDLTTEQWRALASRHFGVGADQMLIVEKPTREDVDFRYRIFNADGSEVEHCGNGARCFVRFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPK (Diaminopimelate epimerase OS=Pseudomonas putida (strain KT2440) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    I P+ A++  DR+ G+G D ++      N + D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEMY (Diaminopimelate epimerase OS=Pseudomonas mendocina (strain ymp) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    + P+ A++  DR+ G+G D ++      + D D+  RIFNSDGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVLD-LISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFRYRIFNSDGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_COLP3 (Diaminopimelate epimerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++F K HGLGNDF+++DN       ++PEQ  K  +RNFG+G D ++      + D D+  RI+N+DGSE   CGNG RCFA+F+
Sbjct:    3 VNFSKMHGLGNDFLVLDNVTQNV-FLSPEQITKFANRNFGVGFDQLLVVEPPYDPDLDFHYRIYNADGSEVGQCGNGARCFAKFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBY (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AYE) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++      V + D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBT (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dapF PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++      V + D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_CLOTH6.706e-1547.62Diaminopimelate epimerase OS=Clostridium thermocel... [more]
DAPF_CHRSD6.706e-1547.06Diaminopimelate epimerase OS=Chromohalobacter sale... [more]
DAPF_BURXL6.706e-1547.67Diaminopimelate epimerase OS=Burkholderia xenovora... [more]
DAPF_BURPP6.706e-1547.67Diaminopimelate epimerase OS=Burkholderia phytofir... [more]
DAPF_RALEJ8.758e-1547.06Diaminopimelate epimerase OS=Ralstonia eutropha (s... [more]
DAPF_PSEPK8.758e-1548.24Diaminopimelate epimerase OS=Pseudomonas putida (s... [more]
DAPF_PSEMY8.758e-1548.24Diaminopimelate epimerase OS=Pseudomonas mendocina... [more]
DAPF_COLP38.758e-1545.88Diaminopimelate epimerase OS=Colwellia psychreryth... [more]
DAPF_ACIBY8.758e-1548.24Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIBT8.758e-1548.24Diaminopimelate epimerase OS=Acinetobacter baumann... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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