FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CLOTH (Diaminopimelate epimerase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dapF PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15 Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGND+I V+ T + E A+K+ DR+FGIG+DG++ M D+ MR+FNSDGSE EMCGN RC +++ Sbjct: 1 MRFTKMHGLGNDYIYVNCFEETVENPS-EVAKKVSDRHFGIGSDGLVLIMPSER-ADFKMRMFNSDGSEAEMCGNAIRCVGKYV 82
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CHRSD (Diaminopimelate epimerase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dapF PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15 Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 LHF K HGLGNDF+++D + R+ E+ +L DR+ GIG D ++ + + D+ RIFN+DG+E E CGNG RCFARF+ Sbjct: 3 LHFTKMHGLGNDFVVID-LITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDFRYRIFNADGNEVENCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURXL (Diaminopimelate epimerase OS=Burkholderia xenovorans (strain LB400) GN=dapF PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15 Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D T+P +TP Q L DR+FG+GAD ++ V D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURPP (Diaminopimelate epimerase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=dapF PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15 Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D T+P +TP Q L DR+FG+GAD ++ V D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RALEJ (Diaminopimelate epimerase OS=Ralstonia eutropha (strain JMP134) GN=dapF PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15 Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D + + +T EQ L R+FG+GAD ++ D D+ RIFN+DGSE E CGNG RCF RF+ Sbjct: 3 LQFTKMHGAGNDFVVLDGIHQ-KLDLTTEQWRALASRHFGVGADQMLIVEKPTREDVDFRYRIFNADGSEVEHCGNGARCFVRFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPK (Diaminopimelate epimerase OS=Pseudomonas putida (strain KT2440) GN=dapF PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15 Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S I P+ A++ DR+ G+G D ++ N + D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEMY (Diaminopimelate epimerase OS=Pseudomonas mendocina (strain ymp) GN=dapF PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15 Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S + P+ A++ DR+ G+G D ++ + D D+ RIFNSDGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LISQHAHVQPKHAKQWGDRHTGVGFDQLLIVEPPSHPDVDFRYRIFNSDGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_COLP3 (Diaminopimelate epimerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=dapF PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15 Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 ++F K HGLGNDF+++DN ++PEQ K +RNFG+G D ++ + D D+ RI+N+DGSE CGNG RCFA+F+ Sbjct: 3 VNFSKMHGLGNDFLVLDNVTQNV-FLSPEQITKFANRNFGVGFDQLLVVEPPYDPDLDFHYRIYNADGSEVGQCGNGARCFAKFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBY (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AYE) GN=dapF PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15 Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF++VD S + ++L DR+FG+G D ++ V + D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBT (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dapF PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15 Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF++VD S + ++L DR+FG+G D ++ V + D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |