FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBS (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain SDF) GN=dapF PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15 Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF++VD S + ++L DR+FG+G D ++ V + D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBC (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain ACICU) GN=dapF PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15 Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF++VD S + ++L DR+FG+G D ++ V + D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIB5 (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AB0057) GN=dapF PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15 Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF++VD S + ++L DR+FG+G D ++ V + D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIB3 (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AB307-0294) GN=dapF PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15 Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF++VD S + ++L DR+FG+G D ++ V + D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DECAR (Diaminopimelate epimerase OS=Dechloromonas aromatica (strain RCB) GN=dapF PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.144e-14 Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVND-TDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D R S ++PEQ L DR+FG+G D ++ D+ RIFN+DG E E CGNG RCF RF+ Sbjct: 3 LKFSKMHGLGNDFVVLDGVRQSVS--LSPEQLCYLADRHFGVGCDQILLVEKASQPGIDFRYRIFNADGGEVEQCGNGARCFVRFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ARCFU (Diaminopimelate epimerase OS=Archaeoglobus fulgidus GN=dapF PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.144e-14 Identity = 39/84 (46.43%), Postives = 47/84 (55.95%), Query Frame = 1 Query: 418 FVKYHGLGNDFILVDNRNST--EPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 F K HG GNDF+L+D P +C RNFG+GADG +F D R FNSDGSE MCGNG RCF+R++ Sbjct: 5 FTKMHGNGNDFVLIDEFEGVIVGEEEKPRFVRAVCHRNFGVGADGALFVQPS-QKADVRFRYFNSDGSEAAMCGNGIRCFSRYV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_VIBF1 (Diaminopimelate epimerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=dapF PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14 Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 415 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 HF K HGLGNDF++VD +P+ +L DR+ GIG D ++ + +TD+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 4 HFSKMHGLGNDFMVVDCLTQNI-FFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEAE (Diaminopimelate epimerase OS=Pseudomonas aeruginosa GN=dapF PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14 Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S + P+ + DRN GIG D ++ + D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA8 (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain LESB58) GN=dapF PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14 Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S + P+ + DRN GIG D ++ + D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DESRM (Diaminopimelate epimerase OS=Desulfotomaculum reducens (strain MI-1) GN=dapF PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14 Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 ++F K HGLGNDFILV+ + T+ T A+++CDR FGIGADG++ + D M+I NSDGSE EMCGN RC A+++ Sbjct: 1 MYFTKVHGLGNDFILVNAGTGQGFTDDCST--LAKEVCDRKFGIGADGLVL-LYDSGVADVRMKIVNSDGSEAEMCGNAIRCVAKYL 84 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |