FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBS (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain SDF) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++      V + D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBC (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain ACICU) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++      V + D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIB5 (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AB0057) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++      V + D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIB3 (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AB307-0294) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAML-GVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF++VD   S    +     ++L DR+FG+G D ++      V + D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DECAR (Diaminopimelate epimerase OS=Dechloromonas aromatica (strain RCB) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.144e-14
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVND-TDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D  R S    ++PEQ   L DR+FG+G D ++          D+  RIFN+DG E E CGNG RCF RF+
Sbjct:    3 LKFSKMHGLGNDFVVLDGVRQSVS--LSPEQLCYLADRHFGVGCDQILLVEKASQPGIDFRYRIFNADGGEVEQCGNGARCFVRFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ARCFU (Diaminopimelate epimerase OS=Archaeoglobus fulgidus GN=dapF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.144e-14
Identity = 39/84 (46.43%), Postives = 47/84 (55.95%), Query Frame = 1
Query:  418 FVKYHGLGNDFILVDNRNST--EPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            F K HG GNDF+L+D            P     +C RNFG+GADG +F        D   R FNSDGSE  MCGNG RCF+R++
Sbjct:    5 FTKMHGNGNDFVLIDEFEGVIVGEEEKPRFVRAVCHRNFGVGADGALFVQPS-QKADVRFRYFNSDGSEAAMCGNGIRCFSRYV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_VIBF1 (Diaminopimelate epimerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  415 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            HF K HGLGNDF++VD         +P+   +L DR+ GIG D ++      + +TD+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    4 HFSKMHGLGNDFMVVDCLTQNI-FFSPDLIRRLADRHRGIGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEAE (Diaminopimelate epimerase OS=Pseudomonas aeruginosa GN=dapF PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    + P+  +   DRN GIG D ++      + D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA8 (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain LESB58) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    + P+  +   DRN GIG D ++      + D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DESRM (Diaminopimelate epimerase OS=Desulfotomaculum reducens (strain MI-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.494e-14
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++F K HGLGNDFILV+    +  T+   T   A+++CDR FGIGADG++  +      D  M+I NSDGSE EMCGN  RC A+++
Sbjct:    1 MYFTKVHGLGNDFILVNAGTGQGFTDDCST--LAKEVCDRKFGIGADGLVL-LYDSGVADVRMKIVNSDGSEAEMCGNAIRCVAKYL 84          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_ACIBS8.758e-1548.24Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIBC8.758e-1548.24Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIB58.758e-1548.24Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIB38.758e-1548.24Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_DECAR1.144e-1447.67Diaminopimelate epimerase OS=Dechloromonas aromati... [more]
DAPF_ARCFU1.144e-1446.43Diaminopimelate epimerase OS=Archaeoglobus fulgidu... [more]
DAPF_VIBF11.494e-1448.81Diaminopimelate epimerase OS=Vibrio fischeri (stra... [more]
DAPF_PSEAE1.494e-1448.24Diaminopimelate epimerase OS=Pseudomonas aeruginos... [more]
DAPF_PSEA81.494e-1448.24Diaminopimelate epimerase OS=Pseudomonas aeruginos... [more]
DAPF_DESRM1.494e-1448.28Diaminopimelate epimerase OS=Desulfotomaculum redu... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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