FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_VIBSL (Diaminopimelate epimerase OS=Vibrio splendidus (strain LGP32) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14 Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 415 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 HF K HGLGNDF++VD +P+ +L DR+ G+G D ++ + +TD+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 4 HFSKMHGLGNDFMVVDCITQNI-FFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_VIBCH (Diaminopimelate epimerase OS=Vibrio cholerae GN=dapF PE=3 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14 Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 415 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 HF K HGLGNDF++VD +PE +L DR+ G+G D ++ + ++D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 4 HFSKMHGLGNDFMVVDCITQNV-FFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_VIBC3 (Diaminopimelate epimerase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14 Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 415 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 HF K HGLGNDF++VD +PE +L DR+ G+G D ++ + ++D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 4 HFSKMHGLGNDFMVVDCITQNV-FFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEAB (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14 Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S + P+ + DRN G+G D ++ + D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA7 (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain PA7) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14 Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S + P+ + DRN G+G D ++ + D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_METPP (Diaminopimelate epimerase OS=Methylibium petroleiphilum (strain PM1) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14 Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFAMLGVNDT---DYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K G GNDF+++D + EP ++P Q L DR FG+GAD V+ ++G +D D+T RI N+DGSE E CGNG RCF R++ Sbjct: 3 LRFTKMQGAGNDFVVLDA--TREPLTLSPAQYRYLADRRFGVGADQVL--IVGASDEPGIDFTYRIVNADGSEVEQCGNGARCFVRYV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CUPTR (Diaminopimelate epimerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14 Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D + + +TP Q L R+FG+GAD ++ D D+ RI N+DGSE E CGNG RCF RF+ Sbjct: 3 LKFTKMHGAGNDFVVLDGIHQ-QIDLTPAQWRALASRHFGVGADQILIVEKPTRPDVDFRYRIVNADGSEVEHCGNGARCFVRFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_AZOVD (Diaminopimelate epimerase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=dapF PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14 Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D + I P+ A++ DR+ GIG D ++ D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVID-LVTQHAHIQPKHAKQWGDRHTGIGFDQLLIVEPPSRPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RALEH (Diaminopimelate epimerase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dapF PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14 Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D + + +TP Q L R+FG+GAD ++ D D+ RI N+DGSE E CGNG RCF RF+ Sbjct: 3 LQFTKMHGAGNDFVVLDGIHQ-QIDLTPAQWRALASRHFGVGADQILIVEKPSRPDVDFRYRIVNADGSEVEHCGNGARCFVRFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_METM7 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=dapF PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.328e-14 Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAEK-LCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGND+I VD +T +I P + + + DR+FGIG+DG++ +L D+ MR+FNSDGSE EMCGN RC +F+ Sbjct: 1 MKFTKMHGLGNDYIYVD---ATSQKIENPNEISRFVSDRHFGIGSDGLVL-ILPSEIADFKMRMFNSDGSEAEMCGNAIRCVGKFV 82 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |