FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_VIBSL (Diaminopimelate epimerase OS=Vibrio splendidus (strain LGP32) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  415 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            HF K HGLGNDF++VD         +P+   +L DR+ G+G D ++      + +TD+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    4 HFSKMHGLGNDFMVVDCITQNI-FFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_VIBCH (Diaminopimelate epimerase OS=Vibrio cholerae GN=dapF PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  415 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            HF K HGLGNDF++VD         +PE   +L DR+ G+G D ++      + ++D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    4 HFSKMHGLGNDFMVVDCITQNV-FFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_VIBC3 (Diaminopimelate epimerase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  415 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            HF K HGLGNDF++VD         +PE   +L DR+ G+G D ++      + ++D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    4 HFSKMHGLGNDFMVVDCITQNV-FFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEAB (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    + P+  +   DRN G+G D ++      + D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA7 (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain PA7) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    + P+  +   DRN G+G D ++      + D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_METPP (Diaminopimelate epimerase OS=Methylibium petroleiphilum (strain PM1) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFAMLGVNDT---DYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K  G GNDF+++D   + EP  ++P Q   L DR FG+GAD V+  ++G +D    D+T RI N+DGSE E CGNG RCF R++
Sbjct:    3 LRFTKMQGAGNDFVVLDA--TREPLTLSPAQYRYLADRRFGVGADQVL--IVGASDEPGIDFTYRIVNADGSEVEQCGNGARCFVRYV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CUPTR (Diaminopimelate epimerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D  +  +  +TP Q   L  R+FG+GAD ++        D D+  RI N+DGSE E CGNG RCF RF+
Sbjct:    3 LKFTKMHGAGNDFVVLDGIHQ-QIDLTPAQWRALASRHFGVGADQILIVEKPTRPDVDFRYRIVNADGSEVEHCGNGARCFVRFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_AZOVD (Diaminopimelate epimerase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=dapF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   +    I P+ A++  DR+ GIG D ++        D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVID-LVTQHAHIQPKHAKQWGDRHTGIGFDQLLIVEPPSRPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RALEH (Diaminopimelate epimerase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dapF PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D  +  +  +TP Q   L  R+FG+GAD ++        D D+  RI N+DGSE E CGNG RCF RF+
Sbjct:    3 LQFTKMHGAGNDFVVLDGIHQ-QIDLTPAQWRALASRHFGVGADQILIVEKPSRPDVDFRYRIVNADGSEVEHCGNGARCFVRFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_METM7 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=dapF PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.328e-14
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRI-TPEQAEK-LCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGND+I VD   +T  +I  P +  + + DR+FGIG+DG++  +L     D+ MR+FNSDGSE EMCGN  RC  +F+
Sbjct:    1 MKFTKMHGLGNDYIYVD---ATSQKIENPNEISRFVSDRHFGIGSDGLVL-ILPSEIADFKMRMFNSDGSEAEMCGNAIRCVGKFV 82          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_VIBSL1.951e-1447.62Diaminopimelate epimerase OS=Vibrio splendidus (st... [more]
DAPF_VIBCH1.951e-1447.62Diaminopimelate epimerase OS=Vibrio cholerae GN=da... [more]
DAPF_VIBC31.951e-1447.62Diaminopimelate epimerase OS=Vibrio cholerae serot... [more]
DAPF_PSEAB1.951e-1447.06Diaminopimelate epimerase OS=Pseudomonas aeruginos... [more]
DAPF_PSEA71.951e-1447.06Diaminopimelate epimerase OS=Pseudomonas aeruginos... [more]
DAPF_METPP1.951e-1447.73Diaminopimelate epimerase OS=Methylibium petroleip... [more]
DAPF_CUPTR1.951e-1445.88Diaminopimelate epimerase OS=Cupriavidus taiwanens... [more]
DAPF_AZOVD1.951e-1448.24Diaminopimelate epimerase OS=Azotobacter vinelandi... [more]
DAPF_RALEH2.548e-1445.88Diaminopimelate epimerase OS=Ralstonia eutropha (s... [more]
DAPF_METM73.328e-1447.67Diaminopimelate epimerase OS=Methanococcus maripal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
back to top