FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_YERP3 (Diaminopimelate epimerase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_YERE8 (Diaminopimelate epimerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQMLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SODGM (Diaminopimelate epimerase OS=Sodalis glossinidius (strain morsitans) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPEMIRRLSDRHCGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SHIF8 (Diaminopimelate epimerase OS=Shigella flexneri serotype 5b (strain 8401) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SALTY (Diaminopimelate epimerase OS=Salmonella typhimurium GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SALTI (Diaminopimelate epimerase OS=Salmonella typhi GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SALSV (Diaminopimelate epimerase OS=Salmonella schwarzengrund (strain CVM19633) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SALPK (Diaminopimelate epimerase OS=Salmonella paratyphi A (strain AKU_12601) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SALPB (Diaminopimelate epimerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SALPA (Diaminopimelate epimerase OS=Salmonella paratyphi A GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLSDRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV 84
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_YERP34.806e-1344.71Diaminopimelate epimerase OS=Yersinia pseudotuberc... [more]
DAPF_YERE84.806e-1344.71Diaminopimelate epimerase OS=Yersinia enterocoliti... [more]
DAPF_SODGM4.806e-1344.71Diaminopimelate epimerase OS=Sodalis glossinidius ... [more]
DAPF_SHIF84.806e-1344.71Diaminopimelate epimerase OS=Shigella flexneri ser... [more]
DAPF_SALTY4.806e-1344.71Diaminopimelate epimerase OS=Salmonella typhimuriu... [more]
DAPF_SALTI4.806e-1344.71Diaminopimelate epimerase OS=Salmonella typhi GN=d... [more]
DAPF_SALSV4.806e-1344.71Diaminopimelate epimerase OS=Salmonella schwarzeng... [more]
DAPF_SALPK4.806e-1344.71Diaminopimelate epimerase OS=Salmonella paratyphi ... [more]
DAPF_SALPB4.806e-1344.71Diaminopimelate epimerase OS=Salmonella paratyphi ... [more]
DAPF_SALPA4.806e-1344.71Diaminopimelate epimerase OS=Salmonella paratyphi ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
back to top