FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECOLC (Diaminopimelate epimerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECOL5 (Diaminopimelate epimerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECOHS (Diaminopimelate epimerase OS=Escherichia coli O9:H4 (strain HS) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECODH (Diaminopimelate epimerase OS=Escherichia coli (strain K12 / DH10B) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECOBW (Diaminopimelate epimerase OS=Escherichia coli (strain K12 / BW2952) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECO8A (Diaminopimelate epimerase OS=Escherichia coli O8 (strain IAI1) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECO81 (Diaminopimelate epimerase OS=Escherichia coli O81 (strain ED1a) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNTDGSEVAQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECO7I (Diaminopimelate epimerase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECO5E (Diaminopimelate epimerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
[Close]
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECO57 (Diaminopimelate epimerase OS=Escherichia coli O157:H7 GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_ECOLC4.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli (str... [more]
DAPF_ECOL54.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli O6:K... [more]
DAPF_ECOHS4.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli O9:H... [more]
DAPF_ECODH4.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli (str... [more]
DAPF_ECOBW4.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli (str... [more]
DAPF_ECO8A4.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli O8 (... [more]
DAPF_ECO814.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli O81 ... [more]
DAPF_ECO7I4.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli O7:K... [more]
DAPF_ECO5E4.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli O157... [more]
DAPF_ECO574.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli O157... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
back to top