FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECO55 (Diaminopimelate epimerase OS=Escherichia coli (strain 55989 / EAEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECO45 (Diaminopimelate epimerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECO27 (Diaminopimelate epimerase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECO24 (Diaminopimelate epimerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DESDA (Diaminopimelate epimerase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITP--EQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K  G+GND++ +   N  + RI    E A K+ DR+FGIG+DG++  +      D  MR+FN+DGSE EMCGN  RC  +++
Sbjct:    5 LRFTKMQGIGNDYVYI---NGFQERIDSPGELARKISDRHFGIGSDGLVLILPSAT-ADVRMRMFNADGSESEMCGNAVRCVGKYV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_COXBU (Diaminopimelate epimerase OS=Coxiella burnetii GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDT-DYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++F K  G GNDF+++D    T  ++T  Q +K+ +R FG+G D ++      N++ D+  RIFN+DGSE   CGNG RC ARFI
Sbjct:    3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_COXBR (Diaminopimelate epimerase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDT-DYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++F K  G GNDF+++D    T  ++T  Q +K+ +R FG+G D ++      N++ D+  RIFN+DGSE   CGNG RC ARFI
Sbjct:    3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_COXBN (Diaminopimelate epimerase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDT-DYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++F K  G GNDF+++D    T  ++T  Q +K+ +R FG+G D ++      N++ D+  RIFN+DGSE   CGNG RC ARFI
Sbjct:    3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_COXB2 (Diaminopimelate epimerase OS=Coxiella burnetii (strain CbuG_Q212) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDT-DYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++F K  G GNDF+++D    T  ++T  Q +K+ +R FG+G D ++      N++ D+  RIFN+DGSE   CGNG RC ARFI
Sbjct:    3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_COXB1 (Diaminopimelate epimerase OS=Coxiella burnetii (strain CbuK_Q154) GN=dapF PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.806e-13
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDT-DYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++F K  G GNDF+++D    T  ++T  Q +K+ +R FG+G D ++      N++ D+  RIFN+DGSE   CGNG RC ARFI
Sbjct:    3 VNFTKMQGSGNDFVVID-ATKTPFQLTTSQIQKMANRRFGVGFDQLLVIEPPKNNSVDFHFRIFNADGSEVGQCGNGARCIARFI 86          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_ECO554.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli (str... [more]
DAPF_ECO454.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli O45:... [more]
DAPF_ECO274.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli O127... [more]
DAPF_ECO244.806e-1344.71Diaminopimelate epimerase OS=Escherichia coli O139... [more]
DAPF_DESDA4.806e-1343.02Diaminopimelate epimerase OS=Desulfovibrio desulfu... [more]
DAPF_COXBU4.806e-1343.53Diaminopimelate epimerase OS=Coxiella burnetii GN=... [more]
DAPF_COXBR4.806e-1343.53Diaminopimelate epimerase OS=Coxiella burnetii (st... [more]
DAPF_COXBN4.806e-1343.53Diaminopimelate epimerase OS=Coxiella burnetii (st... [more]
DAPF_COXB24.806e-1343.53Diaminopimelate epimerase OS=Coxiella burnetii (st... [more]
DAPF_COXB14.806e-1343.53Diaminopimelate epimerase OS=Coxiella burnetii (st... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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