FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ECOL6 (Diaminopimelate epimerase OS=Escherichia coli O6 GN=dapF PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +P+   +L DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPDLIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BRAHW (Diaminopimelate epimerase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=dapF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 41/87 (47.13%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEK----LCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            L F K HG GND+I +   N  + + T E A K    L  R++ IGADG+I  M   +  D  MR+FN DGSE EMCGNG RC A++
Sbjct:    3 LSFTKMHGTGNDYIYI---NCFKEKFTVEDAIKYSPILSHRHYSIGADGIILIMPS-DKADVQMRMFNYDGSESEMCGNGIRCVAKY 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACTP7 (Diaminopimelate epimerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=dapF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF+++D        +T +   KL DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SPHAL (Diaminopimelate epimerase OS=Sphingopyxis alaskensis GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 1
Query:  418 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            F K HGLGNDF+++D R +    +TP +A  + DR  GIG D +I      +  D  MRIFN+DG E E CGN  RC A  I
Sbjct:    5 FTKMHGLGNDFVVIDARVAPV-EMTPARAHAIADRRHGIGCDQLILLEPSTS-ADVKMRIFNADGGEVEACGNATRCVATLI 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEGPL (Diaminopimelate epimerase OS=Legionella pneumophila (strain Lens) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVND-TDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            + F K HGLGNDFI++D  N +  ++T EQ +KL +R+ GIG D  +       +  D+  RIFN+DG E   CGNG RC A F
Sbjct:    3 IKFTKMHGLGNDFIVLDGVNQSI-QLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNYRIFNADGQEVGQCGNGARCIALF 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEGPH (Diaminopimelate epimerase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVND-TDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            + F K HGLGNDFI++D  N +  ++T EQ +KL +R+ GIG D  +       +  D+  RIFN+DG E   CGNG RC A F
Sbjct:    3 IKFTKMHGLGNDFIVLDGVNQSI-QLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNYRIFNADGQEVGQCGNGARCIALF 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEGPC (Diaminopimelate epimerase OS=Legionella pneumophila (strain Corby) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVND-TDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            + F K HGLGNDFI++D  N +  ++T EQ +KL +R+ GIG D  +       +  D+  RIFN+DG E   CGNG RC A F
Sbjct:    3 IKFTKMHGLGNDFIVLDGVNQSI-QLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNYRIFNADGQEVGQCGNGARCIALF 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HAEPS (Diaminopimelate epimerase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF+++D        +T E   K  DR+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEELIRKWADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEIXX (Diaminopimelate epimerase OS=Leifsonia xyli subsp. xyli GN=dapF PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 38/96 (39.58%), Postives = 55/96 (57.29%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN------------DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            LHF K  G GNDF+L  + + T P ++  Q  ++CDR+FG+GADGVI A+                  ++ M  +N+DGS  EMCGNG R + R++
Sbjct:    4 LHFTKGQGTGNDFVLYADPDGTLP-LSAGQIAEICDRHFGVGADGVIRAVRSKRLPEGAEALADDEAAEWFMDYYNADGSAAEMCGNGIRVYVRYL 98          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RICPR (Diaminopimelate epimerase OS=Rickettsia prowazekii GN=dapF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 36/84 (42.86%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++FVK HGLGNDF++V+ R+          A+ + DR+ GIG D  I  +   N+  YTM I+N DGS  ++CGN  RC A+ I
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLATSYNLSHLAKNMADRHTGIGCDQCI--IYEENNDFYTMIIYNIDGSSAKLCGNAIRCLAKLI 86          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_ECOL61.071e-1243.53Diaminopimelate epimerase OS=Escherichia coli O6 G... [more]
DAPF_BRAHW1.071e-1247.13Diaminopimelate epimerase OS=Brachyspira hyodysent... [more]
DAPF_ACTP71.071e-1243.53Diaminopimelate epimerase OS=Actinobacillus pleuro... [more]
DAPF_SPHAL1.826e-1246.34Diaminopimelate epimerase OS=Sphingopyxis alaskens... [more]
DAPF_LEGPL1.826e-1245.24Diaminopimelate epimerase OS=Legionella pneumophil... [more]
DAPF_LEGPH1.826e-1245.24Diaminopimelate epimerase OS=Legionella pneumophil... [more]
DAPF_LEGPC1.826e-1245.24Diaminopimelate epimerase OS=Legionella pneumophil... [more]
DAPF_HAEPS1.826e-1243.53Diaminopimelate epimerase OS=Haemophilus parasuis ... [more]
DAPF_LEIXX2.385e-1239.58Diaminopimelate epimerase OS=Leifsonia xyli subsp.... [more]
DAPF_RICPR3.115e-1242.86Diaminopimelate epimerase OS=Rickettsia prowazekii... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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