FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NITOC (Diaminopimelate epimerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dapF PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12 Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 1 Query: 418 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAM-LGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 F K GLGNDF+++D S +T Q + +R GIG D V+ + D+ RIFN+DG E E CGNG RCFARF+ Sbjct: 5 FTKMQGLGNDFVVIDAL-SQPLSLTASQVRWIANRRLGIGCDQVLLVTPASLPAIDFGYRIFNADGGEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_XANCP (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris GN=dapF PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12 Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1 Query: 403 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +G L F K HG GNDF+++D RN T P A +L DR+FG+G D ++ + + RI+NSDGS + CGNG RC A ++ Sbjct: 7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWL 93
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_XANCB (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris (strain B100) GN=dapF PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12 Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1 Query: 403 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +G L F K HG GNDF+++D RN T P A +L DR+FG+G D ++ + + RI+NSDGS + CGNG RC A ++ Sbjct: 7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWL 93
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_XANC8 (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dapF PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12 Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1 Query: 403 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 +G L F K HG GNDF+++D RN T P A +L DR+FG+G D ++ + + RI+NSDGS + CGNG RC A ++ Sbjct: 7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWL 93
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RICFE (Diaminopimelate epimerase OS=Rickettsia felis GN=dapF PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12 Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 ++FVK HGLGNDF++V+ R+ + + A+ + DR+ GIG D F + +D Y M I+N DGS ++CGN RC A+ I Sbjct: 5 INFVKMHGLGNDFVVVNKRDLSSSYDLSQLAKNMADRHTGIGCDQ--FIIYEEHDDFYEMIIYNIDGSSAKLCGNATRCLAKLI 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PROMH (Diaminopimelate epimerase OS=Proteus mirabilis (strain HI4320) GN=dapF PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12 Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF++VD + +PE +L +R+ G+G D ++ + + D+ RIFN+DGSE CGNG RCFARF+ Sbjct: 1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIAC (Diaminopimelate epimerase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=dapF PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12 Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K G GNDF+++D T+ R+ TP Q L DR+FG+GAD ++ D+ I N+DG E E CGNG RCFAR++ Sbjct: 3 IRFTKMQGAGNDFVVLDE---TQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPAEGIDFEYVIHNADGGEVEQCGNGARCFARYV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SPHWW (Diaminopimelate epimerase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dapF PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12 Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRC 648 + F K HGLGNDF+++D R + +T +A L DR G+G D +I D MRIFN+DGSE E CGN RC Sbjct: 3 VRFHKMHGLGNDFVVIDARATAPVEMTAARARALADRKTGVGCDQLILLEPSA-VADARMRIFNADGSEVEACGNATRC 80
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEGPA (Diaminopimelate epimerase OS=Legionella pneumophila (strain Paris) GN=dapF PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12 Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVND-TDYTMRIFNSDGSEPEMCGNGXRCFARF 660 + F K HGLGNDFI++D N + ++T +Q +KL +R+ GIG D + + D+ RIFN+DG E CGNG RC A F Sbjct: 3 IKFTKMHGLGNDFIVLDGVNQSI-QLTVKQIQKLANRHTGIGFDQCLLIESSQTEGIDFNYRIFNADGQEVGQCGNGARCIALF 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HYDS0 (Diaminopimelate epimerase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=dapF PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12 Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1 Query: 424 KYHGLGNDFILVDNRNSTEPRITP-------EQAEKLCDRNFGIGADGVIFAMLGVNDTD-YTMRIFNSDGSEPEMCGNGXRCFARF 660 KY G GNDFI++DNR++ + E KLC+++ +GADGVI N + ++ FN+DGS EMCGNG RC ARF Sbjct: 5 KYQGSGNDFIIIDNRDNFVYKEIEKLGLSINEFVRKLCEQHTSVGADGVILIEKARNTKNHFSWAFFNADGSAAEMCGNGSRCAARF 91 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |