FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NITOC (Diaminopimelate epimerase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dapF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  418 FVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAM-LGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            F K  GLGNDF+++D   S    +T  Q   + +R  GIG D V+      +   D+  RIFN+DG E E CGNG RCFARF+
Sbjct:    5 FTKMQGLGNDFVVIDAL-SQPLSLTASQVRWIANRRLGIGCDQVLLVTPASLPAIDFGYRIFNADGGEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_XANCP (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  403 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +G L F K HG GNDF+++D RN T P      A +L DR+FG+G D ++      + +     RI+NSDGS  + CGNG RC A ++
Sbjct:    7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWL 93          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_XANCB (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris (strain B100) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  403 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +G L F K HG GNDF+++D RN T P      A +L DR+FG+G D ++      + +     RI+NSDGS  + CGNG RC A ++
Sbjct:    7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWL 93          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_XANC8 (Diaminopimelate epimerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  403 SGFLHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            +G L F K HG GNDF+++D RN T P      A +L DR+FG+G D ++      + +     RI+NSDGS  + CGNG RC A ++
Sbjct:    7 TGRLRFTKMHGAGNDFVVLDLRNGTPPP-DASLAARLADRHFGVGCDQILTIETPRSAEAVAAYRIWNSDGSHSQQCGNGARCVAAWL 93          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RICFE (Diaminopimelate epimerase OS=Rickettsia felis GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++FVK HGLGNDF++V+ R+ +      + A+ + DR+ GIG D   F +   +D  Y M I+N DGS  ++CGN  RC A+ I
Sbjct:    5 INFVKMHGLGNDFVVVNKRDLSSSYDLSQLAKNMADRHTGIGCDQ--FIIYEEHDDFYEMIIYNIDGSSAKLCGNATRCLAKLI 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PROMH (Diaminopimelate epimerase OS=Proteus mirabilis (strain HI4320) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF++VD   +     +PE   +L +R+ G+G D ++      + + D+  RIFN+DGSE   CGNG RCFARF+
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELICRLANRHTGVGFDQLLVVEAPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ACIAC (Diaminopimelate epimerase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAEKLCDRNFGIGADGVIFAMLG-VNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K  G GNDF+++D    T+ R+  TP Q   L DR+FG+GAD ++          D+   I N+DG E E CGNG RCFAR++
Sbjct:    3 IRFTKMQGAGNDFVVLDE---TQGRLGLTPAQYRYLADRHFGVGADQILTVRPSPAEGIDFEYVIHNADGGEVEQCGNGARCFARYV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_SPHWW (Diaminopimelate epimerase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRC 648
            + F K HGLGNDF+++D R +    +T  +A  L DR  G+G D +I         D  MRIFN+DGSE E CGN  RC
Sbjct:    3 VRFHKMHGLGNDFVVIDARATAPVEMTAARARALADRKTGVGCDQLILLEPSA-VADARMRIFNADGSEVEACGNATRC 80          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_LEGPA (Diaminopimelate epimerase OS=Legionella pneumophila (strain Paris) GN=dapF PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVND-TDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            + F K HGLGNDFI++D  N +  ++T +Q +KL +R+ GIG D  +       +  D+  RIFN+DG E   CGNG RC A F
Sbjct:    3 IKFTKMHGLGNDFIVLDGVNQSI-QLTVKQIQKLANRHTGIGFDQCLLIESSQTEGIDFNYRIFNADGQEVGQCGNGARCIALF 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HYDS0 (Diaminopimelate epimerase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=dapF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  424 KYHGLGNDFILVDNRNSTEPRITP-------EQAEKLCDRNFGIGADGVIFAMLGVNDTD-YTMRIFNSDGSEPEMCGNGXRCFARF 660
            KY G GNDFI++DNR++   +          E   KLC+++  +GADGVI      N  + ++   FN+DGS  EMCGNG RC ARF
Sbjct:    5 KYQGSGNDFIIIDNRDNFVYKEIEKLGLSINEFVRKLCEQHTSVGADGVILIEKARNTKNHFSWAFFNADGSAAEMCGNGSRCAARF 91          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_NITOC3.115e-1244.58Diaminopimelate epimerase OS=Nitrosococcus oceani ... [more]
DAPF_XANCP4.068e-1242.05Diaminopimelate epimerase OS=Xanthomonas campestri... [more]
DAPF_XANCB4.068e-1242.05Diaminopimelate epimerase OS=Xanthomonas campestri... [more]
DAPF_XANC84.068e-1242.05Diaminopimelate epimerase OS=Xanthomonas campestri... [more]
DAPF_RICFE4.068e-1241.67Diaminopimelate epimerase OS=Rickettsia felis GN=d... [more]
DAPF_PROMH4.068e-1243.53Diaminopimelate epimerase OS=Proteus mirabilis (st... [more]
DAPF_ACIAC4.068e-1242.53Diaminopimelate epimerase OS=Acidovorax avenae sub... [more]
DAPF_SPHWW5.313e-1245.57Diaminopimelate epimerase OS=Sphingomonas wittichi... [more]
DAPF_LEGPA5.313e-1244.05Diaminopimelate epimerase OS=Legionella pneumophil... [more]
DAPF_HYDS06.939e-1243.68Diaminopimelate epimerase OS=Hydrogenobaculum sp. ... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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