FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BACTN (Diaminopimelate epimerase OS=Bacteroides thetaiotaomicron GN=dapF PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AEKLCDRNFGIGADGVIFAMLGVND-TDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HG GND+I VD   +  P   PE+ A +    + GIG+DG+I  ++G +D  D++MRIFN+DGSE  MCGNG RC  +++
Sbjct:    5 IKFTKMHGAGNDYIYVDT--TRYPIAAPEKKAIEWSKFHTGIGSDGLI--LIGSSDKADFSMRIFNADGSEAMMCGNGSRCVGKYV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_AZOPC (Diaminopimelate epimerase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=dapF PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HG GND+I +D     E    PE+ A +L DR+ GIG+DG++  M   +   + MR+FNSDGSE +MCGN  RC  +++
Sbjct:    1 MKFTKMHGAGNDYIYIDCFK--EKIDCPEELAIRLSDRHKGIGSDGLVLIMPS-DKCSFRMRMFNSDGSEAQMCGNAIRCVGKYV 82          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CLAM3 (Diaminopimelate epimerase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN------------DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K  G GNDF+L  +  + E  +T  Q + LCDR+FGIGADG I A+L               D ++ M   N DGS  EMCGNG R F  F+
Sbjct:    4 LQFTKGQGTGNDFVLFADP-AGEIDLTDTQVQALCDRHFGIGADGTIRAVLSTRIPEGRAALEEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFL 98          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RICAH (Diaminopimelate epimerase OS=Rickettsia akari (strain Hartford) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 34/84 (40.48%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++FVK HGLGNDF++V+ R+        + A+ + DR+ GIG D   F +   ++  Y M I+N DGS  ++CGN  RC A+ I
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLLSSYDLSQLAKNMADRHTGIGCDQ--FIIYEEHNDFYEMIIYNIDGSSAKLCGNATRCLAKLI 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_HALHL (Diaminopimelate epimerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K   LGNDF+++D        +TPE    L DR  G+G D ++ A    +   D   RIFN+DG+E E CGNG RC ARF+
Sbjct:    1 MRFTKMEALGNDFVVLDGIRQ-RLHLTPETIRTLADRRRGVGCDQLLIAEPPAHIAADVRYRIFNADGTEVEHCGNGVRCLARFL 84          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_DIAST (Diaminopimelate epimerase OS=Diaphorobacter sp. (strain TPSY) GN=dapF PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRI--TPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K  G GNDF+++D    T+ R+  TP Q   L DR+FG+GAD ++          D+   I N+DG + E CGNG RCFAR++
Sbjct:    3 IRFTKMQGAGNDFVVLDE---TQGRLGLTPAQYRFLADRHFGVGADQILTVRPSPGAGIDFEYVIHNADGGQVEQCGNGARCFARYV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RICRS (Diaminopimelate epimerase OS=Rickettsia rickettsii (strain Sheila Smith) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++FVK HGLGNDF++V+ R+ +      + A+ + +R+ GIG D   F +   ++  Y M I+N DGS  ++CGN  RC A+ I
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQ--FILYEEHNDFYEMIIYNIDGSSAKLCGNATRCLAKLI 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_RICRO (Diaminopimelate epimerase OS=Rickettsia rickettsii (strain Iowa) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            ++FVK HGLGNDF++V+ R+ +      + A+ + +R+ GIG D   F +   ++  Y M I+N DGS  ++CGN  RC A+ I
Sbjct:    5 INFVKMHGLGNDFVIVNKRDLSSSYDLSQLAKNMAERHTGIGCDQ--FILYEEHNDFYEMIIYNIDGSSAKLCGNATRCLAKLI 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CLAMS (Diaminopimelate epimerase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN------------DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K  G GNDF+L  +  + E  +T  Q + LCDR+FGIGADG I A+L               D ++ M   N DGS  EMCGNG R F  F+
Sbjct:    4 LQFTKGQGTGNDFVLFADP-AGEIDLTDTQVQALCDRHFGIGADGTIRAVLSSRIPEGRAALDEDPDAEWFMDYRNVDGSPAEMCGNGIRVFTLFL 98          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BACCN (Diaminopimelate epimerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dapF PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.637e-11
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  418 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARF 660
            F K HGLGN +I V   N  E  I  E+    AEK+ +RN GIGADG+I  +         MR+FN+DGSE + CGNG RC A++
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEHIPEEELALVAEKVSNRNTGIGADGMIL-ICPSEVAPVKMRMFNNDGSEGKSCGNGLRCVAKY 86          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_BACTN6.939e-1245.35Diaminopimelate epimerase OS=Bacteroides thetaiota... [more]
DAPF_AZOPC1.184e-1143.53Diaminopimelate epimerase OS=Azobacteroides pseudo... [more]
DAPF_CLAM31.546e-1142.71Diaminopimelate epimerase OS=Clavibacter michigane... [more]
DAPF_RICAH2.019e-1140.48Diaminopimelate epimerase OS=Rickettsia akari (str... [more]
DAPF_HALHL2.019e-1142.35Diaminopimelate epimerase OS=Halorhodospira haloph... [more]
DAPF_DIAST2.019e-1141.38Diaminopimelate epimerase OS=Diaphorobacter sp. (s... [more]
DAPF_RICRS2.637e-1139.29Diaminopimelate epimerase OS=Rickettsia rickettsii... [more]
DAPF_RICRO2.637e-1139.29Diaminopimelate epimerase OS=Rickettsia rickettsii... [more]
DAPF_CLAMS2.637e-1142.71Diaminopimelate epimerase OS=Clavibacter michigane... [more]
DAPF_BACCN2.637e-1147.06Diaminopimelate epimerase OS=Bacillus cereus subsp... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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