FC876353
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEFL (Diaminopimelate epimerase OS=Pseudomonas fluorescens GN=dapF PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15 Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S I P+ A++ DR+ GIG D ++ N D D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPNNPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NITEU (Diaminopimelate epimerase OS=Nitrosomonas europaea GN=dapF PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15 Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDFI++D N + + P + DR+FGIG D ++ D+ RIFN+DG E E CGNG RCFARF+ Sbjct: 3 LKFTKMHGLGNDFIVIDAINQSVS-LDPATIRRWADRHFGIGFDQLLVVEKPGESGDFRYRIFNADGGEVEQCGNGARCFARFV 85
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_IDILO (Diaminopimelate epimerase OS=Idiomarina loihiensis GN=dapF PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15 Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 LHF K HGLGNDF++VDN + P+Q + DR+ GIG D ++ + D D+ RIFN+DGSE CGNG RCFA+F+ Sbjct: 3 LHFSKMHGLGNDFMVVDNVTQNL-YVNPDQIRRWADRHTGIGFDQMLLVEPPYDPDLDFHYRIFNADGSEVAQCGNGARCFAKFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CLOPE (Diaminopimelate epimerase OS=Clostridium perfringens GN=dapF PE=3 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15 Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HG GNDFI++++ N+ E A+K+C R FGIGADG++ N D M I NSDGS MCGNG RCFA+++ Sbjct: 1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVRKNEN-CDIEMVIINSDGSYAAMCGNGIRCFAKYV 83
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURTA (Diaminopimelate epimerase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dapF PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15 Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HG GNDF+++D + P +T L DR+FGIGAD ++ V+ D+ RIFN DG E E CGNG RCF +F+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ALISL (Diaminopimelate epimerase OS=Aliivibrio salmonicida (strain LFI1238) GN=dapF PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15 Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1 Query: 415 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 HF K HGLGNDF++VD +P+ +L DRN GIG D ++ + +TD+ RIFNSDG+E E CGNG RCFARF+ Sbjct: 4 HFSKMHGLGNDFMVVDCLTQNI-FFSPDLIRRLADRNRGIGFDQLLVVEAPYDPETDFHYRIFNSDGTEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA6 (Diaminopimelate epimerase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dapF PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.134e-15 Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF+++DN + E+ +L DRNFGIG D ++ + + D+ RIFNSDGSE CGNG RCFARF+ Sbjct: 3 VQFSKMHGLGNDFVVIDNVTQNV-FFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFHYRIFNSDGSEVSQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSYIN (Diaminopimelate epimerase OS=Psychromonas ingrahamii (strain 37) GN=dapF PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15 Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 + F K HGLGNDF+++DN ++ + +L DRNFGIG D ++ + + D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 IQFSKMHGLGNDFMVIDNVTQNV-FLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPW (Diaminopimelate epimerase OS=Pseudomonas putida (strain W619) GN=dapF PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15 Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S I P+ A++ DR+ GIG D ++ N + D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFV 86
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPG (Diaminopimelate epimerase OS=Pseudomonas putida (strain GB-1) GN=dapF PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15 Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663 L F K HGLGNDF+++D S I P+ A++ DR+ GIG D ++ N + D+ RIFN+DGSE E CGNG RCFARF+ Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFV 86 The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 275
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bpback to top |