FC876353

Overview
NameFC876353
Unique NameFC876353
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEFL (Diaminopimelate epimerase OS=Pseudomonas fluorescens GN=dapF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    I P+ A++  DR+ GIG D ++      N D D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPNNPDVDFRYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_NITEU (Diaminopimelate epimerase OS=Nitrosomonas europaea GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDFI++D  N +   + P    +  DR+FGIG D ++         D+  RIFN+DG E E CGNG RCFARF+
Sbjct:    3 LKFTKMHGLGNDFIVIDAINQSVS-LDPATIRRWADRHFGIGFDQLLVVEKPGESGDFRYRIFNADGGEVEQCGNGARCFARFV 85          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_IDILO (Diaminopimelate epimerase OS=Idiomarina loihiensis GN=dapF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            LHF K HGLGNDF++VDN       + P+Q  +  DR+ GIG D ++      + D D+  RIFN+DGSE   CGNG RCFA+F+
Sbjct:    3 LHFSKMHGLGNDFMVVDNVTQNL-YVNPDQIRRWADRHTGIGFDQMLLVEPPYDPDLDFHYRIFNADGSEVAQCGNGARCFAKFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_CLOPE (Diaminopimelate epimerase OS=Clostridium perfringens GN=dapF PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HG GNDFI++++ N+       E A+K+C R FGIGADG++      N  D  M I NSDGS   MCGNG RCFA+++
Sbjct:    1 MKFSKMHGNGNDFIVIEDLNNEYLGKEGEIAQKMCHRRFGIGADGILIVRKNEN-CDIEMVIINSDGSYAAMCGNGIRCFAKYV 83          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_BURTA (Diaminopimelate epimerase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MLGVNDTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HG GNDF+++D  +   P +T      L DR+FGIGAD ++      V+  D+  RIFN DG E E CGNG RCF +F+
Sbjct:    3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFV 87          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_ALISL (Diaminopimelate epimerase OS=Aliivibrio salmonicida (strain LFI1238) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  415 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            HF K HGLGNDF++VD         +P+   +L DRN GIG D ++      + +TD+  RIFNSDG+E E CGNG RCFARF+
Sbjct:    4 HFSKMHGLGNDFMVVDCLTQNI-FFSPDLIRRLADRNRGIGFDQLLVVEAPYDPETDFHYRIFNSDGTEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA6 (Diaminopimelate epimerase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.134e-15
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF+++DN        + E+  +L DRNFGIG D ++      + + D+  RIFNSDGSE   CGNG RCFARF+
Sbjct:    3 VQFSKMHGLGNDFVVIDNVTQNV-FFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFHYRIFNSDGSEVSQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSYIN (Diaminopimelate epimerase OS=Psychromonas ingrahamii (strain 37) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            + F K HGLGNDF+++DN       ++ +   +L DRNFGIG D ++      + + D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 IQFSKMHGLGNDFMVIDNVTQNV-FLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPW (Diaminopimelate epimerase OS=Pseudomonas putida (strain W619) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    I P+ A++  DR+ GIG D ++      N + D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFV 86          
BLAST of FC876353 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPG (Diaminopimelate epimerase OS=Pseudomonas putida (strain GB-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  412 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMLGVN-DTDYTMRIFNSDGSEPEMCGNGXRCFARFI 663
            L F K HGLGNDF+++D   S    I P+ A++  DR+ GIG D ++      N + D+  RIFN+DGSE E CGNG RCFARF+
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFV 86          
The following BLAST results are available for this feature:
BLAST of FC876353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
DAPF_PSEFL2.305e-1550.59Diaminopimelate epimerase OS=Pseudomonas fluoresce... [more]
DAPF_NITEU3.010e-1547.62Diaminopimelate epimerase OS=Nitrosomonas europaea... [more]
DAPF_IDILO3.931e-1548.24Diaminopimelate epimerase OS=Idiomarina loihiensis... [more]
DAPF_CLOPE3.931e-1547.62Diaminopimelate epimerase OS=Clostridium perfringe... [more]
DAPF_BURTA3.931e-1545.88Diaminopimelate epimerase OS=Burkholderia thailand... [more]
DAPF_ALISL3.931e-1550.00Diaminopimelate epimerase OS=Aliivibrio salmonicid... [more]
DAPF_PSEA65.134e-1548.24Diaminopimelate epimerase OS=Pseudoalteromonas atl... [more]
DAPF_PSYIN6.706e-1547.06Diaminopimelate epimerase OS=Psychromonas ingraham... [more]
DAPF_PSEPW6.706e-1549.41Diaminopimelate epimerase OS=Pseudomonas putida (s... [more]
DAPF_PSEPG6.706e-1549.41Diaminopimelate epimerase OS=Pseudomonas putida (s... [more]

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Properties
Property NameValue
Genbank descriptionC32003G07EF DevOvary1 Citrus clementina cDNA clone C32003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876353 ID=FC876353; Name=FC876353; organism=Citrus clementina; type=EST; length=666bp
GGAATACGGTAACGTTTCTGCAGGAAATGCAGAGGATACCGTCTCTTCTC
TTGCACAAAACCTAGATTCTCTTTTCAACGTAACGGCACTGTATCACACA
AACTAAACCAACCACCGCATTTGACATTACCGCGACCAAGAGCAGAAACA
GAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATAACCACCACGCGCTC
ACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCACTCCAATCAATCCTC
TTCGATCCTCCTCTTTATCTTATTCGTTGACTCGACCATTCAGTTCCAAT
TTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCATCTTCTATGAGCAG
CATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTTTCTTGACCGCAGAG
AGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCCTCGGCAACGACTTC
ATTTTGGTTGATAACAGGAATTCTACGGAACCTAGGATAACTCCGGAGCA
AGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGGGGCCGATGGAGTGA
TCTTCGCCATGCTTGGAGTCAATGACACTGATTATACAATGAGAATTTTC
AATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAATGGAGNTCGATGCTT
TGCCAGATTCATTGCT
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