FC876354

Overview
NameFC876354
Unique NameFC876354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_MYCLE (Chaperone protein htpG OS=Mycobacterium leprae GN=htpG PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-15
Identity = 46/121 (38.02%), Postives = 74/121 (61.16%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDL-------NLIGQFGVGFYSVYLVADYVEVIS-KHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            +DK  +IL++RD GIGMT+ +++  +GT+AKSGT+   +K+  + +L        LIGQFG+GFYS ++VA+ VE+++ K  +     W S  +  + I E     P  +GT + LHL+ E
Sbjct:   73 VDKNTRILTVRDNGIGMTRAEVVDLIGTLAKSGTAKLRQKLHAAKNLKDTAASEGLIGQFGIGFYSSFMVANKVELLTRKAGETAATRWSSDGEATYTI-ESVDEAP--QGTSVTLHLKPE 190          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_NATTJ (Chaperone protein htpG OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=htpG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 45/115 (39.13%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF--VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISK-HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRD 336
            +DKE + L I D GIGMT+++L  N+G IA+SG+  F    + +     ++IGQFGVGFYS ++VA+ V +ISK +  D  Y WES+    +++S     E    GT++ L +++
Sbjct:   66 VDKENRQLKISDTGIGMTRQELEDNIGVIARSGSLDFKKANEQEIKDGHDIIGQFGVGFYSAFMVAEEVTIISKAYGSDHAYKWESEGIEGYSVSP---TEKESVGTDVILKIKE 177          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_NOCFA (Chaperone protein htpG OS=Nocardia farcinica GN=htpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15
Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM----QTSGDLNLIGQFGVGFYSVYLVADYVEVIS-KHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLR 333
            +DK+ +IL++RD GIGM++ +++  +GT+AKSGT+    K+      +    LIGQFG+GFYS ++VAD V + + K  +     WES A  +    ED    P  +GT + LHL+
Sbjct:   70 VDKDNRILTVRDNGIGMSRAEVVDLIGTLAKSGTAELRRKLSEAKSEAAAEELIGQFGIGFYSTFMVADKVTLTTRKAGETGGTRWESSAGSSTYTIEDLAEAP--QGTAVSLHLK 183          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_VESOH (Chaperone protein htpG OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=htpG PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 45/118 (38.14%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSG--DLNLIGQFGVGFYSVYLVADYVEVISK---HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            ++K+   ++I D GIGM++ ++ KN+GTIA SGT  F++ +  +   D NLIGQFGVGFYS ++V+D VE+I++       K   W S   G ++I  ++ + P   GT + LH++ +
Sbjct:   69 VNKDANTITITDNGIGMSEVEVNKNIGTIANSGTKKFLKSLNETQAQDSNLIGQFGVGFYSSFIVSDKVEIITRKAGSKSKKGTKWASTGKGKYSI--ESIDRP-DFGTSVILHIKKD 183          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_BACTN (Chaperone protein htpG OS=Bacteroides thetaiotaomicron GN=htpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 42/111 (37.84%), Postives = 67/111 (60.36%), Query Frame = 1
Query:   13 KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISK-HNDDKQYV-WESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            K  ++I DRGIG+T E++ K +  IA SG + F+EK +   +  +IG FG+GFYS ++VA  VE+I+K + D+ Q + W       F I E    +   RG++I L++ D+
Sbjct:   67 KDTITISDRGIGLTAEEIEKYINQIAFSGANDFLEKYKDDANA-IIGHFGLGFYSAFMVAKKVEIITKSYRDEAQAIKWTCDGSPEFTIEE---VDKADRGSDIILYIDDD 173          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_BACFR (Chaperone protein htpG OS=Bacteroides fragilis GN=htpG PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.097e-12
Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   13 KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISK-HNDDKQYV-WESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            K  ++I DRGIG+T E++ K +  IA SG + F+EK +   +  +IG FG+GFYS ++V+  VE+I+K + +  Q V W       F + E    E   RGT+I L++ D+
Sbjct:   67 KDTITISDRGIGLTAEEIDKYINQIAFSGANDFLEKYKNDANA-IIGHFGLGFYSAFMVSKKVEIITKSYKEGAQAVKWTCDGSPEFTLEE---VEKADRGTDIVLYIDDD 173          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_BACFN (Chaperone protein htpG OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.097e-12
Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   13 KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISK-HNDDKQYV-WESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            K  ++I DRGIG+T E++ K +  IA SG + F+EK +   +  +IG FG+GFYS ++V+  VE+I+K + +  Q V W       F + E    E   RGT+I L++ D+
Sbjct:   67 KDTITISDRGIGLTAEEIDKYINQIAFSGANDFLEKYKNDANA-IIGHFGLGFYSAFMVSKKVEIITKSYKEGAQAVKWTCDGSPEFTLEE---VEKADRGTDIVLYIDDD 173          
The following BLAST results are available for this feature:
BLAST of FC876354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
HTPG_MYCLE1.187e-1538.02Chaperone protein htpG OS=Mycobacterium leprae GN=... [more]
HTPG_NATTJ1.551e-1539.13Chaperone protein htpG OS=Natranaerobius thermophi... [more]
HTPG_NOCFA4.512e-1538.79Chaperone protein htpG OS=Nocardia farcinica GN=ht... [more]
HTPG_VESOH7.695e-1538.14Chaperone protein htpG OS=Vesicomyosocius okutanii... [more]
HTPG_BACTN3.575e-1237.84Chaperone protein htpG OS=Bacteroides thetaiotaomi... [more]
HTPG_BACFR6.097e-1237.84Chaperone protein htpG OS=Bacteroides fragilis GN=... [more]
HTPG_BACFN6.097e-1237.84Chaperone protein htpG OS=Bacteroides fragilis (st... [more]

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Properties
Property NameValue
Genbank descriptionC32003G08EF DevOvary1 Citrus clementina cDNA clone C32003G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876354 ID=FC876354; Name=FC876354; organism=Citrus clementina; type=EST; length=490bp
CTAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTAT
GACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAA
CATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATT
GGGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGTTGCTGACTATGT
TGAAGTCATTAGCAAACATAATGATGACAAACAGTATGTATGGGAATCAA
AGGCTGATGGAGCATTTGCAATTTCTGAGGACACATGGAATGAGCCACTA
GGACGAGGAACCGAGATTAAATTGCACCTCAGAGATGAAGCTGGGGAGTA
CTTGGAAGAGAGCAAGTTGAAGGAGTTGGTGAAGAAATATTCTGAATTTA
TCAACTTCCCCATCTATATCTGGGCCAGCAAAGAGGTTGATGTGGATGTT
CCTGCTGACGAGGATGACTCAAGTGATGAAGAGGAGAAAG
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