FC876354

Overview
NameFC876354
Unique NameFC876354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.706e-30
Identity = 71/144 (49.31%), Postives = 91/144 (63.19%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEP-LGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIWASK 432
            +K  K L+I D GIGMTK DL+ NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS +LVAD V V SKHNDD  Y WES A G+F I +   N+P L RGT+I L+++++                   FI +PI +   K
Sbjct:   73 NKADKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAFLVADKVVVASKHNDDDCYQWESSAGGSFIIRQ--VNDPELTRGTKITLYIKEDQTDYLEERRIKEIVKKHSQFIGYPIKLTVEK 214          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HSP83_TRYBB (Heat shock protein 83 OS=Trypanosoma brucei brucei GN=HSP83 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.802e-30
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            D+  K L++ D GIGMTK DL+ NLGTIA+SGT +F+E ++  GD+++IGQFGVGFYS YLVAD V V+SK+N+D  Y WES A G F ++  T +  L RGT I LHL+++
Sbjct:   68 DRVNKTLTVEDSGIGMTKADLVNNLGTIARSGTKSFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVVSKNNEDDAYTWESSAGGTFTVT-STPDCDLKRGTRIVLHLKED 178          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HSP83_LEIAM (Heat shock protein 83 OS=Leishmania amazonensis GN=HSP83 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.223e-28
Identity = 61/112 (54.46%), Postives = 80/112 (71.43%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            DKE K L++ D GIGMTK DL+ NLGTIA+SGT AF+E ++   D+++IGQFGVGFYS YLVAD V V SK+N D+ YVWES A G F I+    ++ +     I LHL+++
Sbjct:   68 DKENKTLTVEDNGIGMTKADLVNNLGTIARSGTKAFMEALEAGADMSMIGQFGVGFYSAYLVADRVTVTSKNNSDEVYVWESSAGGTFTITSAPESD-MKLPARITLHLKED 178          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_DESHY (Chaperone protein htpG OS=Desulfitobacterium hafniense (strain Y51) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.710e-27
Identity = 66/148 (44.59%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    4 DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSG---DLNLIGQFGVGFYSVYLVADYVEVISK--HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDEAGXXXXXXXXXXXXXXXXXFINFPIYIWASK 432
            D+  K L+I D GIGMTKEDLI+N+GTIA SG+ AFV+++  +G   D+NLIGQFGVGFYS ++VAD V + S+    D + Y WES   G+++ISE+     L RGT I LHL+++A                  F+ +P+Y+   K
Sbjct:   70 DENAKTLTIADAGIGMTKEDLIENIGTIAHSGSKAFVQRLAEAGDKKDVNLIGQFGVGFYSAFMVADKVSLTSRSYEPDAQGYRWESDGRGSYSISEEM---DLPRGTSITLHLKEDAHSFAQADTVKRIIKQYSSFVPYPVYVGEEK 214          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: H90B4_HUMAN (Putative heat shock protein HSP 90-beta 4 OS=Homo sapiens GN=HSP90AB4P PE=5 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.419e-26
Identity = 58/107 (54.21%), Postives = 79/107 (73.83%), Query Frame = 1
Query:   19 ILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            IL++ + GIGMTK DLI NLG IAKSGT AF+E  Q+  ++++IGQFGVGFYS YLVA+ V  I+KHND++QY W S A  +F +  D   EP+ R T++ LHL+++
Sbjct:   59 ILTLVNTGIGMTKADLINNLGAIAKSGTEAFMEAFQSCAEISMIGQFGVGFYSAYLVAEKV-AITKHNDEEQYSWVSSAGSSFTLHVD-HGEPIDRDTKVILHLKED 163          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJR (Chaperone protein htpG OS=Campylobacter jejuni (strain RM1221) GN=htpG PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.071e-24
Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            +DK+KK LSI D GIGM K+DLI NLGTIAKSGT +F+E +      D  LIGQFGVGFYS ++VA  +EV+SK   DDK Y+W S A+G + I++ +  E   +GT I L+L+D+
Sbjct:   63 IDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG-YEINDASKEE---QGTSITLYLKDD 174          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJ8 (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=htpG PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.399e-24
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            +DK+KK LSI D GIGM K+DLI NLGTIAKSGT +F+E +      D  LIGQFGVGFYS ++VA  +EV+SK   DDK Y+W S A+G + I++    E   +GT I L+L+D+
Sbjct:   63 IDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG-YEINDANKEE---QGTSITLYLKDD 174          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJJ (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=htpG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.827e-24
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            +DK+KK LSI D GIGM K+DLI NLGTIAKSGT +F+E +      D  LIGQFGVGFYS ++VA  +EV+SK   DDK Y+W S A+G + I +    E   +GT I L+L+D+
Sbjct:   63 IDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG-YEIDDANKEE---QGTSITLYLKDD 174          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJE (Chaperone protein htpG OS=Campylobacter jejuni GN=htpG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.827e-24
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            +DK+KK LSI D GIGM K+DLI NLGTIAKSGT +F+E +      D  LIGQFGVGFYS ++VA  +EV+SK   DDK Y+W S A+G + I +    E   +GT I L+L+D+
Sbjct:   63 IDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG-YEIDDANKEE---QGTSITLYLKDD 174          
BLAST of FC876354 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJD (Chaperone protein htpG OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=htpG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.827e-24
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 1
Query:    1 LDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISEDTWNEPLGRGTEIKLHLRDE 339
            +DK+KK LSI D GIGM K DLI NLGTIAKSGT +F+E +      D  LIGQFGVGFYS ++VA  +EV+SK   DDK Y+W S A+G + I++ +  E   +GT I L+L+D+
Sbjct:   63 IDKDKKTLSISDNGIGMDKNDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANG-YEINDASKEE---QGTSITLYLKDD 174          
The following BLAST results are available for this feature:
BLAST of FC876354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
HSP90_BRUPA1.706e-3049.31Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P... [more]
HSP83_TRYBB3.802e-3055.36Heat shock protein 83 OS=Trypanosoma brucei brucei... [more]
HSP83_LEIAM1.223e-2854.46Heat shock protein 83 OS=Leishmania amazonensis GN... [more]
HTPG_DESHY6.710e-2744.59Chaperone protein htpG OS=Desulfitobacterium hafni... [more]
H90B4_HUMAN7.419e-2654.21Putative heat shock protein HSP 90-beta 4 OS=Homo ... [more]
HTPG_CAMJR1.071e-2453.45Chaperone protein htpG OS=Campylobacter jejuni (st... [more]
HTPG_CAMJ81.399e-2453.45Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_CAMJJ1.827e-2453.45Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_CAMJE1.827e-2453.45Chaperone protein htpG OS=Campylobacter jejuni GN=... [more]
HTPG_CAMJD1.827e-2453.45Chaperone protein htpG OS=Campylobacter jejuni sub... [more]

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Properties
Property NameValue
Genbank descriptionC32003G08EF DevOvary1 Citrus clementina cDNA clone C32003G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876354 ID=FC876354; Name=FC876354; organism=Citrus clementina; type=EST; length=490bp
CTAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTAT
GACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAA
CATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATT
GGGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGTTGCTGACTATGT
TGAAGTCATTAGCAAACATAATGATGACAAACAGTATGTATGGGAATCAA
AGGCTGATGGAGCATTTGCAATTTCTGAGGACACATGGAATGAGCCACTA
GGACGAGGAACCGAGATTAAATTGCACCTCAGAGATGAAGCTGGGGAGTA
CTTGGAAGAGAGCAAGTTGAAGGAGTTGGTGAAGAAATATTCTGAATTTA
TCAACTTCCCCATCTATATCTGGGCCAGCAAAGAGGTTGATGTGGATGTT
CCTGCTGACGAGGATGACTCAAGTGATGAAGAGGAGAAAG
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