FC876360

Overview
NameFC876360
Unique NameFC876360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 7.355e-53
Identity = 87/106 (82.08%), Postives = 97/106 (91.51%), Query Frame = 1
Query:  286 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAENNK
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNK 106          

HSP 2 Score: 43.1282 bits (100), Expect = 7.355e-53
Identity = 19/25 (76.00%), Postives = 23/25 (92.00%), Query Frame = 3
Query:  606 ARVLVVCSEITAVTFRGPADTHLDS 680
            ARVL+VCSE TAVTFRGP++T +DS
Sbjct:  108 ARVLIVCSENTAVTFRGPSETDMDS 132          
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.212e-47
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 1
Query:  370 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNK
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 78          

HSP 2 Score: 54.299 bits (129), Expect = 3.212e-47
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 3
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            +GARVLVVCSE+TAVTFRGP+DTHLDS
Sbjct:   78 KGARVLVVCSEVTAVTFRGPSDTHLDS 104          
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.522e-33
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 1
Query:  427 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNK 603
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAENNK
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 58          

HSP 2 Score: 54.299 bits (129), Expect = 1.522e-33
Identity = 24/27 (88.89%), Postives = 27/27 (100.00%), Query Frame = 3
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            +GARVLVVCSE+TAVTFRGP+DTHLDS
Sbjct:   58 KGARVLVVCSEVTAVTFRGPSDTHLDS 84          
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.087e-17
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 1
Query:  529 MMYQQGCFAGGTVLRLAKDLAENNK 603
            MMYQQGCFAGGTVLRLAKDLAENNK
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNK 25          

HSP 2 Score: 54.6842 bits (130), Expect = 2.087e-17
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 3
Query:  600 QGARVLVVCSEITAVTFRGPADTHLDS 680
            +GARVLVVCSEITAVTFRGP+DTHLDS
Sbjct:   25 KGARVLVVCSEITAVTFRGPSDTHLDS 51          
BLAST of FC876360 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.952e-16
Identity = 54/196 (27.55%), Postives = 99/196 (50.51%), Query Frame = 1
Query:    7 TLTKHEPQTYSLRVQLEMATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAE 594
            ++ +H+ Q   ++V ++       R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+
Sbjct: 2755 SVQQHQKQQQKVQV-IQQQQQPLSRLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAK 2945          

HSP 2 Score: 21.1718 bits (43), Expect = 5.952e-16
Identity = 7/14 (50.00%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  609 RVLVVCSEITAVTF 650
            R+LVVC+E+ ++ F
Sbjct: 2951 RILVVCTEVCSLHF 2964          
The following BLAST results are available for this feature:
BLAST of FC876360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY7.355e-5382.08Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA3.212e-4794.87Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA1.522e-3391.53Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO2.087e-17100.00Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI5.952e-1627.55Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC32003H03EF DevOvary1 Citrus clementina cDNA clone C32003H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876360 ID=FC876360; Name=FC876360; organism=Citrus clementina; type=EST; length=682bp
GAGTGCACACTCACCAAGCACGAGCCACAAACATATTCATTAAGGGTTCA
ACTTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACG
GCCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGCGTC
AACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCA
TATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGA
TTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCC
AACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGT
GGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCA
AAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACC
ACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGAT
CGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTT
TCGCCGGTGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACAAC
AAGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCGGTCACTTTC
CGCGGNCCTGCCGATACTCATCTTGATTCTCT
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