FC876370

Overview
NameFC876370
Unique NameFC876370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.781e-62
Identity = 119/210 (56.67%), Postives = 163/210 (77.62%), Query Frame = 2
Query:   59 G*EKMALAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            G +   +  D+ G PFIL+R QE+K RL G DA K+++ A K VA I+RTSLGP+G+DK+L SPDG++T+TNDGATIL+QM+V++QIAKL+V+LS+SQD EIGDGTTGVVV+AG+LLEQAE L+++GIHPIRIA+GYE A ++AV+HL+ I+   +F   +   L ++  T+L SK+V++     A IAV AVL+VADL+RK    +LIK
Sbjct:    3 GLDNAVMVRDDQGNPFILVRDQEKKRRLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVADLQRKDVDFELIK 212          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 3.501e-54
Identity = 106/206 (51.46%), Postives = 157/206 (76.21%), Query Frame = 2
Query:   77 LAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            +A DE GRPFI+++ Q  K R  G +A+K+++ A ++VA I++TSLGP+G+DK+L SPDG++TITNDGATIL QM++DN+IAKL+V+LS+SQD EIGDGTTGVVV+A +LL+QA +L+++GIHPI+IA G++ A+++A+  LE          ++L  + L++   T+L SK+V++   R AE+AV+AV+ V D +RK    DLIK
Sbjct:   20 VAQDEMGRPFIIVKDQGNKKRQHGLEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRKDVDFDLIK 225          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.289e-44
Identity = 97/205 (47.32%), Postives = 143/205 (69.76%), Query Frame = 2
Query:   77 LAFDEFGRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDV-DNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL-EPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLI 685
            L  DE G+ F  +  +++  R++G     AN+   +++A  L TSLGP GMDK+LQS D D+ +TNDGATIL++M++ +N I++L+V+LS SQD EIGDGTT VVV+A +LL+QA+ LL +G+HPI+I+EG+E+    AVEHL  I+++    ++DL E +++   T+L SK+V +   R AEI   AVL VAD+ERK    +LI
Sbjct:    4 LLTDELGQAF-QITDEDKGCRIKGQQCILANIGVVRSIATFLSTSLGPTGMDKILQSKDEDIVVTNDGATILKEMEMTENPISRLIVQLSESQDEEIGDGTTSVVVLASALLDQAQALLGQGVHPIKISEGFEVGLGHAVEHLSEISEE----ISDLKETMMKAAKTSLGSKIVYKSLERFAEICTDAVLMVADMERKDLDFELI 203          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.354e-42
Identity = 91/177 (51.41%), Postives = 131/177 (74.01%), Query Frame = 2
Query:  122 QEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            Q  K + +  D +++N++A KAV+  +RTSLGP+GMDKM+Q+ +G+VTITNDGATIL+QM+V +  AK++VELSR+QD E GDGTT VVV+AG+LL+  EKLL+ GIHP  I++ ++  S  AV+ L  ++   E  L D E LV++  T+LNSK+V++   +LA IAV+AVL V +
Sbjct:   15 QAYKDKSKPADIRQSNINAAKAVSDAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTEMSTPIE--LTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVLKVTE 189          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.944e-42
Identity = 93/198 (46.97%), Postives = 131/198 (66.16%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            G P ++L Q  +  R  G DAQ+ N+ AG+ +A  +RT+LGPKGMDKML    GD+ +TNDG TIL++M V++  AK+++E++++Q+ E+GDGTT  VV+AG LL +AE+LL++ IHP  I  GYEMA   AVE L+ IA+  E    D E L +  MT++  K   + + +LAEI V+AV AV D E      DLIK
Sbjct:    5 GAPIVVLPQNVK--RYVGRDAQRMNILAGRIIAETVRTTLGPKGMDKMLVDELGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNIHPSVIINGYEMARNKAVEELKSIAK--EVKPEDTEMLKKIAMTSITGKGAEKAREQLAEIVVEAVRAVVDEETGKVDKDLIK 198          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.093e-39
Identity = 90/186 (48.39%), Postives = 127/186 (68.28%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            G+P ++L   E   R  G DAQ+ N+ A + VA  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL++AE+LL++ IHP  I +GY +A+  A E LE IA+  E   +D+E L +  +T++  K     +  LAEIAV+AV  VA+
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIVAETIRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYALAAEKAQEILEGIAK--EVSPDDVETLKKAAVTSITGKAAEEEREYLAEIAVEAVRQVAE 187          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.093e-39
Identity = 91/196 (46.43%), Postives = 128/196 (65.31%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA+  +  + D E L +  MT +  K     +  LAEIAV+AV  VA+      H+DL
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDSIAR--DVDVEDREILKKAAMTAITGKAAEEEREYLAEIAVEAVKQVAEKVGDRYHVDL 197          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.181e-39
Identity = 87/195 (44.62%), Postives = 130/195 (66.67%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLD 679
            G+P  +L+  E   R  G DA K N+ A  A++  +R+SLGP+GMDKML    GD+ ITNDG TIL++MDV++  AK+MVE+S++QD  +GDGTT  V++AG LL+QA+ L+ + +HP  I+EGY MAS  A   ++ I+ K   G ++   L++   T+LNSK  +  K +LAEI+ +AV +VA+L     ++D
Sbjct:    4 GQPIFILK--EGTKRESGKDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTK--IGADEKALLLKMAQTSLNSKSASVAKDKLAEISYEAVKSVAELRDGKYYVD 194          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.181e-39
Identity = 91/196 (46.43%), Postives = 132/196 (67.35%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            G P I+L++  ++S   G +A +AN+ A +A+A+IL+T+ GPKGMDKML    GD+TITN+GATIL++MDV +  AK++V++S+ Q+ E GDGT   V+ AG LL++AEKLL+  IHP  I EGY+ A R A E +E IA+   +  +D+E L     T+LNSK V   +   AE+AV+AV  VA+      ++DL
Sbjct:   13 GIPVIILKEGTQRSY--GREALRANIMAVRAIAQILKTTYGPKGMDKMLVDSLGDITITNNGATILDKMDVAHPAAKMLVQISKGQEDEAGDGTKTTVIFAGELLKEAEKLLDINIHPTIIVEGYKEALRKASEVIESIAEPVSY--DDVEKLKLIAKTSLNSKAVAEARDYFAELAVEAVRTVAERRGDRWYVDL 204          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 160.999 bits (406), Expect = 5.426e-39
Identity = 85/163 (52.15%), Postives = 119/163 (73.01%), Query Frame = 2
Query:  164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L  +++  E  L+D E L+ +  T+LNSK+V++    L+ ++V AV+ V D
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVE--LSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVID 196          
The following BLAST results are available for this feature:
BLAST of FC876370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
TCPE_SCHPO7.781e-6256.67T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPE_YEAST3.501e-5451.46T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
TCPE_ENCCU4.289e-4447.32T-complex protein 1 subunit epsilon OS=Encephalito... [more]
TCPD_AEDTR2.354e-4251.41T-complex protein 1 subunit delta OS=Aedes triseri... [more]
THS_METJA8.944e-4246.97Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THS_DESSY1.093e-3948.39Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THSB_THEK81.093e-3946.43Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_THEAC3.181e-3944.62Thermosome subunit beta OS=Thermoplasma acidophilu... [more]
THSB_AERPE3.181e-3946.43Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]
TCPD_HUMAN5.426e-3952.15T-complex protein 1 subunit delta OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC32004A02EF DevOvary1 Citrus clementina cDNA clone C32004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876370 ID=FC876370; Name=FC876370; organism=Citrus clementina; type=EST; length=690bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
CAAGCGCAGATTGGCTGAGATTGCTGTNCAAGCAGTTCTTGCTGTGGCAG
ACTTAGAGAGGAAGGGATGTCATTTAGATTTGATTAAGTG
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