FC876370
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39 Identity = 88/186 (47.31%), Postives = 127/186 (68.28%), Query Frame = 2 Query: 95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652 G+P ++L E R G DAQ+ N+ A + +A +RT+LGPKGMDKML GD+ ITNDGATIL++MD+ + AK+MVE++++QD E GDGTT VV+AG LL++AE+LL++ IHP I +GY +AS+ A E L+ IA+ E +D E L++ MT + K + LA++AV+AV VA+ Sbjct: 6 GQPILIL--PEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYTLASQKAQEILDSIAK--EVKPDDEEVLLKAAMTAITGKAAEEEREYLAKLAVEAVKLVAE 187
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39 Identity = 89/186 (47.85%), Postives = 118/186 (63.44%), Query Frame = 2 Query: 95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652 G+P I+L E+ R G DAQ N++AGKAVA +RT+LGPKGMDKML G V +TNDG TIL++MD+D+ A ++VE+S +Q+ E+GDGTT V+ AG LL+QAE LL+ +H IA+GY A+ A E LE A E +D E L + T + K K L+E+ V AVLAV D Sbjct: 8 GQPMIILG--EDSQRTSGQDAQSMNITAGKAVAEAVRTTLGPKGMDKMLVDSGGQVVVTNDGVTILKEMDIDHPAANMIVEVSETQEDEVGDGTTTAVINAGELLDQAEDLLDSDVHATTIAQGYRQAAEKAKEVLEDNA--IEVTEDDRETLTKIAATAMTGKGAESAKDLLSELVVDAVLAVKD 189
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3) HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39 Identity = 85/163 (52.15%), Postives = 119/163 (73.01%), Query Frame = 2 Query: 164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652 +N+SA KAVA +RTSLGPKGMDKM+Q GDVTITNDGATIL+QM V + A+++VELS++QD E GDGTT VV++AGSLL+ KLL++GIHP I+E ++ A +E L +++ E L+D E L+ + T+LNSK+V++ L+ ++V AV+ V D Sbjct: 39 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPEE--LSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVID 199
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2) HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38 Identity = 89/196 (45.41%), Postives = 129/196 (65.82%), Query Frame = 2 Query: 95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682 G+P ++L E R G DAQ+ N+ A + +A +RT+LGPKGMDKML GD+ ITNDGATIL++MD+ + AK+MVE++++QD E GDGTT VV+AG LL +AE+LL++ IHP I +GY +A+ A E L+ IA+ + + D E L + +T++ K + LAEIAV+AV VA+ + +DL Sbjct: 6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAK--DVDVEDREILKKAAVTSITGKAAEEEREYLAEIAVEAVKQVAEKVGETYKVDL 197
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38 Identity = 89/196 (45.41%), Postives = 129/196 (65.82%), Query Frame = 2 Query: 95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682 G+P ++L E R G DAQ+ N+ A + +A +RT+LGPKGMDKML GD+ ITNDGATIL++MD+ + AK+MVE++++QD E GDGTT VV+AG LL +AE+LL++ IHP I +GY +A+ A E L+ IA+ + + D E L + +T++ K + LAEIAV+AV VA+ + +DL Sbjct: 6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAK--DVDVEDREILKKAAVTSITGKAAEEEREYLAEIAVEAVKQVAEKVGETYKVDL 197
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38 Identity = 87/163 (53.37%), Postives = 117/163 (71.78%), Query Frame = 2 Query: 164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652 +N+SA KAVA +RTSLGPKGMDKM+Q GDVTITNDGATIL+QM V + AK++VELS++QD E GDGTT VVV+AG+LL+ +LL+RGIHP I+E ++ A VE L ++Q + G D E L+ + T+L SK+V++ LA ++V AV+ V D Sbjct: 33 SNISAAKAVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLTAMSQPVQLG--DRETLLNSATTSLCSKVVSQYSSLLAPMSVDAVMRVID 193
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38 Identity = 87/186 (46.77%), Postives = 129/186 (69.35%), Query Frame = 2 Query: 131 KSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688 K+R + + +KAN+ A +AVA +RTSLGPKGMDKM+++ GD+ I+NDG TIL+QM + + +AK++VE+S +QD E GDGTT VV+M G+LL AEKLL +GIHP IAE ++ A+ +VE L ++ K L+D E LV+ T+L+SK+V++ LA +AV VL++A + L+ I+ Sbjct: 14 KNREKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTSRGDIIISNDGHTILKQMAILHPVAKMLVEVSGAQDVEAGDGTTSVVIMTGALLGAAEKLLNKGIHPTIIAESFQRAAERSVEILLNMSTK--ISLDDKEALVRAASTSLSSKIVSQHSSFLAPLAVDCVLSIASHDSTNVDLNDIR 197
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2) HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38 Identity = 84/185 (45.41%), Postives = 124/185 (67.03%), Query Frame = 2 Query: 98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652 +P +L Q + SR G +AQ+ N+ AGK +A +RT+LGPKGMDKML GD+ ITNDG TIL +MD+ + AK++VE++++Q+ E+GDGTT V++AG LL++AEKL+E G+HP IA GY A+ A E LE I+ + +D + L++ +T + K R K +LAE+ V AV+ V + Sbjct: 6 QPIFILPQ--DTSRYVGREAQRINILAGKVLAETVRTTLGPKGMDKMLVDSLGDIVITNDGVTILREMDISHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKEAEKLIEMGVHPTIIALGYRNAALKAQEILEEISME----ASDRDTLMKVAITAMTGKGSERAKEKLAELVVDAVMQVEE 184
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3) HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38 Identity = 84/163 (51.53%), Postives = 118/163 (72.39%), Query Frame = 2 Query: 164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652 +N+SA KAVA +RTSLGPKGMDKM+Q GDVTITNDGATIL+QM V + A+++VELS++QD E GDGTT VV++AGSLL+ KLL++GIHP I+E ++ A +E L +++ E L+D E L+ + T+LNSK+ ++ L+ ++V AV+ V D Sbjct: 36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVE--LSDRETLLNSATTSLNSKVASQYSSLLSPMSVNAVMKVID 196
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3) HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38 Identity = 84/163 (51.53%), Postives = 119/163 (73.01%), Query Frame = 2 Query: 164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652 +N+SA KAVA +RTSLGPKGMDKM+Q GDVTITNDGATIL+QM V + A+++VELS++QD E GDGTT VV++AGSLL+ KLL++GIHP I+E ++ A +E L +++ + L+D E L+ + T+LNSK+V++ L+ ++V AV+ V D Sbjct: 36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQ--LSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVID 196 The following BLAST results are available for this feature:
BLAST of FC876370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 453
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876370 ID=FC876370; Name=FC876370; organism=Citrus clementina; type=EST; length=690bpback to top |