FC876370

Overview
NameFC876370
Unique NameFC876370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39
Identity = 88/186 (47.31%), Postives = 127/186 (68.28%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL++AE+LL++ IHP  I +GY +AS+ A E L+ IA+  E   +D E L++  MT +  K     +  LA++AV+AV  VA+
Sbjct:    6 GQPILIL--PEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYTLASQKAQEILDSIAK--EVKPDDEEVLLKAAMTAITGKAAEEEREYLAKLAVEAVKLVAE 187          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.087e-39
Identity = 89/186 (47.85%), Postives = 118/186 (63.44%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            G+P I+L   E+  R  G DAQ  N++AGKAVA  +RT+LGPKGMDKML    G V +TNDG TIL++MD+D+  A ++VE+S +Q+ E+GDGTT  V+ AG LL+QAE LL+  +H   IA+GY  A+  A E LE  A   E   +D E L +   T +  K     K  L+E+ V AVLAV D
Sbjct:    8 GQPMIILG--EDSQRTSGQDAQSMNITAGKAVAEAVRTTLGPKGMDKMLVDSGGQVVVTNDGVTILKEMDIDHPAANMIVEVSETQEDEVGDGTTTAVINAGELLDQAEDLLDSDVHATTIAQGYRQAAEKAKEVLEDNA--IEVTEDDRETLTKIAATAMTGKGAESAKDLLSELVVDAVLAVKD 189          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 9.256e-39
Identity = 85/163 (52.15%), Postives = 119/163 (73.01%), Query Frame = 2
Query:  164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L  +++  E  L+D E L+ +  T+LNSK+V++    L+ ++V AV+ V D
Sbjct:   39 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPEE--LSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVID 199          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 89/196 (45.41%), Postives = 129/196 (65.82%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA+  +  + D E L +  +T++  K     +  LAEIAV+AV  VA+   +   +DL
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAK--DVDVEDREILKKAAVTSITGKAAEEEREYLAEIAVEAVKQVAEKVGETYKVDL 197          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 89/196 (45.41%), Postives = 129/196 (65.82%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E L+ IA+  +  + D E L +  +T++  K     +  LAEIAV+AV  VA+   +   +DL
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEIAK--DVDVEDREILKKAAVTSITGKAAEEEREYLAEIAVEAVKQVAEKVGETYKVDL 197          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 87/163 (53.37%), Postives = 117/163 (71.78%), Query Frame = 2
Query:  164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  AK++VELS++QD E GDGTT VVV+AG+LL+   +LL+RGIHP  I+E ++ A    VE L  ++Q  + G  D E L+ +  T+L SK+V++    LA ++V AV+ V D
Sbjct:   33 SNISAAKAVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLTAMSQPVQLG--DRETLLNSATTSLCSKVVSQYSSLLAPMSVDAVMRVID 193          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 87/186 (46.77%), Postives = 129/186 (69.35%), Query Frame = 2
Query:  131 KSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            K+R +  + +KAN+ A +AVA  +RTSLGPKGMDKM+++  GD+ I+NDG TIL+QM + + +AK++VE+S +QD E GDGTT VV+M G+LL  AEKLL +GIHP  IAE ++ A+  +VE L  ++ K    L+D E LV+   T+L+SK+V++    LA +AV  VL++A  +     L+ I+
Sbjct:   14 KNREKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTSRGDIIISNDGHTILKQMAILHPVAKMLVEVSGAQDVEAGDGTTSVVIMTGALLGAAEKLLNKGIHPTIIAESFQRAAERSVEILLNMSTK--ISLDDKEALVRAASTSLSSKIVSQHSSFLAPLAVDCVLSIASHDSTNVDLNDIR 197          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 84/185 (45.41%), Postives = 124/185 (67.03%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            +P  +L Q  + SR  G +AQ+ N+ AGK +A  +RT+LGPKGMDKML    GD+ ITNDG TIL +MD+ +  AK++VE++++Q+ E+GDGTT  V++AG LL++AEKL+E G+HP  IA GY  A+  A E LE I+ +     +D + L++  +T +  K   R K +LAE+ V AV+ V +
Sbjct:    6 QPIFILPQ--DTSRYVGREAQRINILAGKVLAETVRTTLGPKGMDKMLVDSLGDIVITNDGVTILREMDISHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKEAEKLIEMGVHPTIIALGYRNAALKAQEILEEISME----ASDRDTLMKVAITAMTGKGSERAKEKLAELVVDAVMQVEE 184          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.579e-38
Identity = 84/163 (51.53%), Postives = 118/163 (72.39%), Query Frame = 2
Query:  164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L  +++  E  L+D E L+ +  T+LNSK+ ++    L+ ++V AV+ V D
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVE--LSDRETLLNSATTSLNSKVASQYSSLLSPMSVNAVMKVID 196          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 84/163 (51.53%), Postives = 119/163 (73.01%), Query Frame = 2
Query:  164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L  +++  +  L+D E L+ +  T+LNSK+V++    L+ ++V AV+ V D
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQ--LSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVID 196          
The following BLAST results are available for this feature:
BLAST of FC876370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
THS_PYRHO7.087e-3947.31Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THS1_HALVO7.087e-3947.85Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
TCPD_BOVIN9.256e-3952.15T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
THSB_THEK11.209e-3845.41Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_PYRKO1.209e-3845.41Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
TCPD_TAKRU1.209e-3853.37T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_KLULA1.209e-3846.77T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
THSA_METTH1.579e-3845.41Thermosome subunit alpha OS=Methanobacterium therm... [more]
TCPD_PONAB1.579e-3851.53T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_RAT2.062e-3851.53T-complex protein 1 subunit delta OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC32004A02EF DevOvary1 Citrus clementina cDNA clone C32004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876370 ID=FC876370; Name=FC876370; organism=Citrus clementina; type=EST; length=690bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
CAAGCGCAGATTGGCTGAGATTGCTGTNCAAGCAGTTCTTGCTGTGGCAG
ACTTAGAGAGGAAGGGATGTCATTTAGATTTGATTAAGTG
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