FC876370

Overview
NameFC876370
Unique NameFC876370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.062e-38
Identity = 84/163 (51.53%), Postives = 119/163 (73.01%), Query Frame = 2
Query:  164 ANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            +N+SA KAVA  +RTSLGPKGMDKM+Q   GDVTITNDGATIL+QM V +  A+++VELS++QD E GDGTT VV++AGSLL+   KLL++GIHP  I+E ++ A    +E L  +++  +  L+D E L+ +  T+LNSK+V++    L+ ++V AV+ V D
Sbjct:   36 SNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQ--LSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVID 196          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.517e-38
Identity = 86/186 (46.24%), Postives = 126/186 (67.74%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ ITNDGATIL++MD+ +  AK+MVE++++QD E GDGTT  VV+AG LL++AE+LL++ IHP  + +GY +A+  A E L+ IA+  E   +D E L++  MT +  K     +  LA++AV+AV  VA+
Sbjct:    6 GQPILIL--PEGTQRYVGRDAQRMNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIVIKGYMLAAEKAQEILDSIAK--EVKPDDEEVLLKAAMTAITGKAAEEEREYLAKLAVEAVKLVAE 187          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.517e-38
Identity = 87/196 (44.39%), Postives = 130/196 (66.33%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            G P I+L+  E  SR  G +A + N++A KAV   L+++ GP+GMDKML    GD+TITNDGATIL++MD+ +  AKL+V++++ QD E  DGT   V++AG L+++AE+LL + IHP  I  G++ A   A++ +E IAQK    +ND++ L +  MT+LNSK V   +  LA+I  +AV  VA+L     ++DL
Sbjct:   13 GIPVIILK--EGSSRTYGKEALRINIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVILAGELVKKAEELLYKEIHPTIIVSGFKKAEEQALKTIEEIAQK--VSVNDMDILKKVAMTSLNSKAVAGAREYLADIVAKAVTQVAELRGDRWYVDL 204          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THS_METKA (Thermosome subunit OS=Methanopyrus kandleri GN=ths PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.593e-38
Identity = 89/188 (47.34%), Postives = 122/188 (64.89%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLE 658
            GR  ++L   E   R  G DAQ+ N+ A + VA  +RT+LGP GMDKML    GDV +TNDG TILE+MD+++  AK++VE++++Q+ E+GDGTT  VV+AG LL +AE LL++ IHP  IA GY MA   A E LE IA+  E   +D E L +   T +  K V + +  LAE+ V+AV  VA+ E
Sbjct:    8 GRQVLIL--PEGYQRFVGRDAQRMNIMAARVVAETVRTTLGPMGMDKMLVDEMGDVVVTNDGVTILEEMDIEHPAAKMVVEVAKTQEDEVGDGTTTAVVLAGELLHKAEDLLQQDIHPTVIARGYRMAVEKAEEILEEIAE--EIDPDDEETLKKIAKTAMTGKGVEKARDYLAELVVKAVKQVAEEE 191          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.023e-37
Identity = 85/196 (43.37%), Postives = 129/196 (65.82%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            G P I+L+  E  SR  G +A + N++A KAV   L+T+ GP+GMDKML    GD+TITNDGATIL++MD+ +  AKL+V++++ QD E  DGT   V+ +G L+++AE+LL + IHP  I  GY+ A  +A++ +E I+ K    +ND E L +  +T+L+SK V   +  LA+I V+A+  VA+L     ++DL
Sbjct:   13 GIPVIILK--EGSSRTYGKEALRINIAAVKAVEEALKTTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEELLYKEIHPTIIVSGYKKAEEMAIKTIEEISTK--VSVNDTEILRKVALTSLSSKAVAGAREHLADIVVKAITQVAELRGDKWYVDL 204          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.023e-37
Identity = 87/186 (46.77%), Postives = 124/186 (66.67%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            G+P ++L   E   R  G DAQ+ N+ A + +A  +RT+LGPKGMDKML    GD+ +TNDGATIL+++D+ +  AK+MVE++++QD E GDGTT  VV+AG LL +AE+LL++ IHP  I +GY +A+  A E LE IA K     +D E L++  MT++  K     K  LA++AV AV  VA+
Sbjct:    6 GQPVVIL--PEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILEEIAIK--VNPDDEETLLRIAMTSITGKNAESHKELLAKLAVDAVKQVAE 187          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.023e-37
Identity = 87/184 (47.28%), Postives = 127/184 (69.02%), Query Frame = 2
Query:  131 KSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            + R +  + + +N+ A ++VA  +RTSLGPKGMDKM+Q+  G+V +TNDGATIL+ + V +  AK++V+LS +QD E GDGTT VV++AGS+L  AEKLL++GIHP  IAE ++ A+   V+ ++  A   E  L+D E L++   T+LNSK+V++    LA IAV AVL V D  R   ++DL
Sbjct:   12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIE--LSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVID-PRVATNVDL 192          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.280e-37
Identity = 89/192 (46.35%), Postives = 129/192 (67.19%), Query Frame = 2
Query:  116 RQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLER-KGCHLDLIK 688
            R++  K + +    + +N+ A KAVA  +RTSLGP+GMDKM+QS +GDVTITNDGATIL QM V +  AK++VELS++QD E GDGTT VVVMAG+LL+ A+ LL +GIHP  I+E ++ A+  A + L+ ++   +   + L  L +   T+LNSK+V++    LA +AV AV  + + E     +L +IK
Sbjct:   19 RERNFKDKDKPESVRNSNIVAAKAVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISESFQSAAAEAEKILDEMSSPVDLSNDAL--LNKMATTSLNSKVVSQHSWLLAPMAVNAVKKIINSENDSNVNLKMIK 208          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSA_ARCFU (Thermosome subunit alpha OS=Archaeoglobus fulgidus GN=thsA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.977e-37
Identity = 84/186 (45.16%), Postives = 122/186 (65.59%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            G P ++L+  E   R  G DAQ+ N+ A + +A  ++++LGPKGMDKML    GDV ITNDG TIL++MDV++  AK+++E++++QD E+GDGTT  VV+AG LL++AE+LL++ IHP  IA GY MA+  AVE LE IA   +  + D E L +   T +  K        L+ + V+AV  VA+
Sbjct:    6 GTPVLILK--EGTQRTVGRDAQRMNIMAARVIAEAVKSTLGPKGMDKMLVDSLGDVVITNDGVTILKEMDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKKAEELLDQDIHPTVIARGYRMAANKAVEILESIA--MDIDVEDEETLKKIAATAITGKHSEYALDHLSSLVVEAVKRVAE 187          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THS_METTL (Thermosome subunit OS=Methanococcus thermolithotrophicus GN=ths PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.889e-37
Identity = 83/197 (42.13%), Postives = 129/197 (65.48%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            +P ++L   E   R  G DAQ+ N+ AG+ +   +R++LGPKGMDKML    GD+ +TNDG TIL++M V++  AK+++E++++Q+ E+GDGTT  VV+AG LL +AE+LL++ +HP  + +GY++A + A E L+ IA   +   +D E L +  MT++  K   + K +L E+ V+AV AV D E      DLIK
Sbjct:    5 QPVVVL--PENVKRFMGRDAQRMNILAGRIIGETVRSTLGPKGMDKMLVDDLGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNVHPTIVIKGYQLAVQKAQEVLKEIA--MDVKADDKEILHKIAMTSITGKGAEKAKEKLGEMIVEAVTAVVD-ESGKVDKDLIK 196          
The following BLAST results are available for this feature:
BLAST of FC876370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
TCPD_MOUSE2.062e-3851.53T-complex protein 1 subunit delta OS=Mus musculus ... [more]
THS_PYRAB3.517e-3846.24Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THSB_SULTO3.517e-3844.39Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THS_METKA4.593e-3847.34Thermosome subunit OS=Methanopyrus kandleri GN=ths... [more]
THSB_SULAC1.023e-3743.37Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
THSA_THEK81.023e-3746.77Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
TCPD_SCHPO1.023e-3747.28T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_CAEEL2.280e-3746.35T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
THSA_ARCFU2.977e-3745.16Thermosome subunit alpha OS=Archaeoglobus fulgidus... [more]
THS_METTL3.889e-3742.13Thermosome subunit OS=Methanococcus thermolithotro... [more]

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Properties
Property NameValue
Genbank descriptionC32004A02EF DevOvary1 Citrus clementina cDNA clone C32004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876370 ID=FC876370; Name=FC876370; organism=Citrus clementina; type=EST; length=690bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
CAAGCGCAGATTGGCTGAGATTGCTGTNCAAGCAGTTCTTGCTGTGGCAG
ACTTAGAGAGGAAGGGATGTCATTTAGATTTGATTAAGTG
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