FC876370

Overview
NameFC876370
Unique NameFC876370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.292e-36
Identity = 83/185 (44.86%), Postives = 125/185 (67.57%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADL 655
            P ++L+  E   R +G +AQ+ N+ A KA+A  +RT+LGPKGMDKML    GD+ I+NDGATIL++MDV++  AK++VE+S++QD  +GDGTT  VV++G LL+QAE LL++G+HP  I+ GY +A   A + ++ IA+K      D   L +  +T L+ K        LA++ V+AV AVA++
Sbjct:    7 PILVLK--EGTQREQGKNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK----STDDATLRKIALTALSGKNTGLSNDFLADLVVKAVNAVAEV 185          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_ASHGO (T-complex protein 1 subunit delta OS=Ashbya gossypii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.292e-36
Identity = 81/174 (46.55%), Postives = 123/174 (70.69%), Query Frame = 2
Query:  131 KSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            K+R +  + +KAN+ A +AVA  +RTSLGPKGMDKM+++  G++ I+NDG TIL+QM + + +AK++VE+S +QD E GDGTT VV++ G+LL  AEKLL +GIHP  IAE ++ A + AVE L  ++++    L D   LV+   T+L+SK+V++    LA +AV  VL++ +
Sbjct:   13 KNREKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTARGEILISNDGHTILKQMAILHPVAKMLVEVSAAQDSEAGDGTTSVVILTGALLGAAEKLLAKGIHPTIIAESFQRAGQRAVEVLLGMSKR--ISLQDRAELVRAASTSLSSKIVSQYSTFLAPLAVDCVLSLTN 184          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSB_DESMO (Thermosome subunit beta (Fragment) OS=Desulfurococcus mobilis GN=thsB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36
Identity = 79/182 (43.41%), Postives = 123/182 (67.58%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            R  G DA + N+ A +A++ +++T+ GPKGMDKML    GDVTITNDGATIL++ ++ +  AK++V++++SQD E+GDGT   V++AG LL+ AE+LL++ IHP  I  GY MA   A++ L+++A+  +  LN+ E L +   T+L SK V+  +   A+IAV+AV  V +      ++DL
Sbjct:    2 RTTGRDALRTNILAARAISEMIKTTYGPKGMDKMLVDALGDVTITNDGATILDKAEIQHPAAKMLVQVAKSQDSEVGDGTKRAVILAGELLKYAEELLDKNIHPTVIISGYRMAMEEALKILDQMAEPID--LNNEELLRKVARTSLTSKAVHDAREFFADIAVKAVKQVVEKRGDKNYVDL 181          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSA_SULSO (Thermosome subunit alpha OS=Sulfolobus solfataricus GN=thsA PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.134e-35
Identity = 90/207 (43.48%), Postives = 132/207 (63.77%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL------EPLVQTCMTTLNSKMVNRCK--RRLAEIAVQAVLAVADLERKGCH---LDLIK 688
            P +LL+  E  SR  G DA + N+ A K +A +LR+SLGPKG+DKML    GDVTITNDGATI++ M++ +  AKL+VE +++QD E+GDGTT  VV+AG+LLE+AE LL++ IHP  I EGY+ A   A+E L ++  + +  + DL      + L +   TTL SK +       ++ ++ + A++ VA+    G +   LDLIK
Sbjct:    4 PVLLLK--EGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYNKALELLPQLGTRID--IKDLNSSVARDTLRKIAFTTLASKFIAEGAELNKIIDMVIDAIVNVAEPLPNGGYNVSLDLIK 206          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSA_SULSH (Thermosome subunit alpha OS=Sulfolobus shibatae GN=thsA PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.787e-35
Identity = 90/207 (43.48%), Postives = 132/207 (63.77%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL------EPLVQTCMTTLNSKMVNRCK--RRLAEIAVQAVLAVADLERKGCH---LDLIK 688
            P +LL+  E  SR  G DA + N+ A K +A +LR+SLGPKG+DKML    GDVTITNDGATI++ M++ +  AKL+VE +++QD E+GDGTT  VV+AG+LLE+AE LL++ IHP  I EGY+ A   A+E L ++  + +  + DL      + L +   TTL SK +       ++ ++ + A++ VA+    G +   LDLIK
Sbjct:    4 PVLLLK--EGTSRTTGRDALRNNILAAKTLAEMLRSSLGPKGLDKMLIDSFGDVTITNDGATIVKDMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGALLEKAESLLDQNIHPTIIIEGYKKAYTKALELLPQLGTRID--IRDLNSSVARDTLRKIAFTTLASKFIAEGAELNKIIDMVIDAIVNVAEPLPNGGYNVSLDLIK 206          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.787e-35
Identity = 82/179 (45.81%), Postives = 122/179 (68.16%), Query Frame = 2
Query:  131 KSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            K++ +  + +K+N+ A +AVA  +RTSLGPKGMDKM+Q+  G V I+NDG TIL+ M V +  AK++V+LS SQD   GDGTT VV++AGSLL  A+KLL++GIHP  IAE ++ A++ A E +  +++  +  L+D E L++   T+LNSK+V++    LA + V A L  A    +G
Sbjct:   12 KNKEKPLEVRKSNILAARAVADAIRTSLGPKGMDKMIQTARGQVIISNDGNTILQHMAVMHPAAKMLVDLSASQDSVAGDGTTSVVILAGSLLGAADKLLKKGIHPSIIAENFQKAAQRAAEVVMDMSKPID--LSDRETLIRAASTSLNSKIVSQFSSTLAPMLVDAALQAAKKTPEG 188          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.753e-35
Identity = 81/185 (43.78%), Postives = 120/185 (64.86%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVA 649
            G+P I++   ++  R++  DAQ+ N+SA +AVA  +R++LGPKGMDKML S  GDVT+TNDG TIL++MD+DN  A+++VE++ +Q+ E GDGTT  V +AG LL+ AE LLER IHP  I +GY +A+  A E ++ +A   +   +D + +     T++  K     K  L+ I   AV  VA
Sbjct:    9 GQPMIIMG--DDAQRVKDRDAQEHNISAARAVADAVRSTLGPKGMDKMLVSSMGDVTVTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLAAEQAREEVDNVA--VDVDPDDKDLIRSVAETSMTGKGAELDKELLSSIIYDAVNQVA 189          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_DEBHA (T-complex protein 1 subunit delta OS=Debaryomyces hansenii GN=CCT4 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.059e-34
Identity = 77/179 (43.02%), Postives = 123/179 (68.72%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            + +K+N+ A +AV+  +RTSLGPKGMDKM+++ +G++ I+NDGATIL+ M V +  A+++V++S +QD E GDGTT V ++ GSLL  AEKLL +GIHP  I+E ++ A+  + E L  ++ K    L+D E L++   T+L+SK+V++    L+ +AV +VL V + E     L+ I+
Sbjct:   24 EVRKSNILAARAVSDAIRTSLGPKGMDKMIKTKNGEIIISNDGATILKHMAVLHPAARMLVDVSAAQDVEAGDGTTSVAILTGSLLGAAEKLLNKGIHPTLISESFQRAATRSAEVLLEMSHK--ISLDDKEALIRAASTSLSSKIVSQHSSLLSPLAVNSVLKVMNEEHTNVDLNDIR 200          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.383e-34
Identity = 84/203 (41.38%), Postives = 128/203 (63.05%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRR--LAEIAVQAVLAVADLERKGCH---LDLIK 688
            G P ++L+  E   R  G +A +AN+ A + +A +L++SLGP+G+DKML    GD+T+TNDGATI+++M++ +  AKL+VE++++QD E+GDGTT VVV+AG+LLE+AEKLL+  +HP  I EGY  A   A+  ++  A   E  + D   L +   TTL SK V     R  +  + + A+  VA+    G +   LD +K
Sbjct:    5 GYPVLILK--EGTQRTYGREALRANILAARVLAEMLKSSLGPRGLDKMLVDAFGDITVTNDGATIVKEMEIQHPAAKLLVEVAKAQDAEVGDGTTSVVVLAGALLEKAEKLLDENLHPTIIIEGYTKAMEEALRLVDEAAVPVE--VEDDSVLRRIAETTLASKFVGTGPERDKIISMVIDAIRTVAEKRPDGGYEVDLDYVK 203          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.864e-34
Identity = 85/205 (41.46%), Postives = 135/205 (65.85%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEF-GLNDL---EPLVQTCMTTLNSKMVNRCKR--RLAEIAVQAVLAVADLERKGCH---LDLIK 688
            P +LL++  ++S   G DA K N+ A   +A +L++SLGP+G+DKML    GDVTITNDGATI+++M++ +  AKL+VE +++QD E+GDGTT  VV+AG LL++A+ LL++ IHP  I EGY+ A   ++E ++++A K +   LN L   + L +   TT++SK +   +   ++  + + AV  VA+   +G +   LDLIK
Sbjct:    5 PVLLLKEGTQRSS--GRDALKNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKADDLLDQNIHPTIIIEGYKKALNKSLEIIDQLATKIDVSNLNSLATRDQLKKIVYTTMSSKFIAGGEEMDKIMNMVIDAVSIVAEPLPEGGYNVPLDLIK 207          
The following BLAST results are available for this feature:
BLAST of FC876370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
THSA_THEAC3.292e-3644.86Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
TCPD_ASHGO3.292e-3646.55T-complex protein 1 subunit delta OS=Ashbya gossyp... [more]
THSB_DESMO7.334e-3643.41Thermosome subunit beta (Fragment) OS=Desulfurococ... [more]
THSA_SULSO2.134e-3543.48Thermosome subunit alpha OS=Sulfolobus solfataricu... [more]
THSA_SULSH2.787e-3543.48Thermosome subunit alpha OS=Sulfolobus shibatae GN... [more]
TCPD_YARLI2.787e-3545.81T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]
THSB_HALSA4.753e-3543.78Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPD_DEBHA1.059e-3443.02T-complex protein 1 subunit delta OS=Debaryomyces ... [more]
THSA_AERPE1.383e-3441.38Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
THSA_SULTO6.864e-3441.46Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]

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Properties
Property NameValue
Genbank descriptionC32004A02EF DevOvary1 Citrus clementina cDNA clone C32004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876370 ID=FC876370; Name=FC876370; organism=Citrus clementina; type=EST; length=690bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
CAAGCGCAGATTGGCTGAGATTGCTGTNCAAGCAGTTCTTGCTGTGGCAG
ACTTAGAGAGGAAGGGATGTCATTTAGATTTGATTAAGTG
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