FC876370

Overview
NameFC876370
Unique NameFC876370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.965e-34
Identity = 82/201 (40.80%), Postives = 130/201 (64.68%), Query Frame = 2
Query:  122 QEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLE------PLVQTCMTTLNSKMVNRCKR---RLAEIAVQAVLAVADLERKGCH---LDLIK 688
            +E  SR  G DA + N+ A   +A +L++SLGP+G+DKML    GDVTITNDGATI+++M++ +  AKL+VE +++QD E+GDGTT  VV+AG LL++AE+LLE+ +HP  I +GY+ A   A+E +++++ K +  +NDL        L +   TT++SK +        ++ ++ + A+  VA+    G +   LDLIK
Sbjct:    9 KEGTSRSSGRDALRNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKAEELLEQNVHPTIIIDGYKKALTKALEIIDQLSLKID--VNDLSSPTAKAQLKKIVSTTMSSKFIAGGAEEIDKIIDLVIDAITIVAEKRPDGTYNVPLDLIK 207          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 77/165 (46.67%), Postives = 114/165 (69.09%), Query Frame = 2
Query:  152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAV 646
            D + +N+ A +AVA  +RTSLGPKGMDKM+ SP+ +V I+NDGATIL+ +++ +  AK++ EL+++QD E GDGTT V V+AGSLL    +L+ +GIHP  I+E + +A   ++E L  ++      L D   LV++  T+LNSK+V++    LA IAV AVL+V
Sbjct:   26 DVRTSNIVAARAVADAIRTSLGPKGMDKMIISPNNEVLISNDGATILQNLELRHPAAKMLAELAKAQDIEAGDGTTSVCVIAGSLLGAVSQLMAKGIHPSIISEAFNLALNKSLEVL--VSMSVPVSLTDRVSLVKSATTSLNSKVVSQ-YTNLASIAVDAVLSV 187          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 77/178 (43.26%), Postives = 116/178 (65.17%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            R  G D +  NV A +AV+ I++TSLGP G+DKML    GDVTITNDGATIL  ++V++  AK++VEL+  QD E+GDGTT VV++A  LL++A  L+   IHP  I  GY +A R + +++ E++  K E  L  + PL+    T+++SK+++      A + V+AVL+V    ++G
Sbjct:   14 RQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVE-KLGKV-PLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRG 189          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 71/172 (41.28%), Postives = 113/172 (65.70%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAV 646
            R  G   +K NV A  + A  ++TSLGP G+DKML    GDVTITNDGATIL+ +DV++  AK++V+L++ QD E+GDGTT VV++A +LL+ A++L+ R +HP  +  GY +A R A ++++   +   + +N L    L+    T ++SK++N      +++AV A++AV
Sbjct:    8 RTSGESVRKQNVLAACSFANFVKTSLGPVGLDKMLVDDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQ---EHMAYDVNKLGKAGLINVARTAMSSKLINLDADMFSQMAVDALMAV 176          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.096e-31
Identity = 78/188 (41.49%), Postives = 116/188 (61.70%), Query Frame = 2
Query:  125 EEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            E  +R  G  AQ +N+ AGKAVA  +RT+LGP+GMDKML    G+V ITNDGATILE+MD+++  A+++VE+S++Q+ E+GDGTT   V+ G LL  AE LL+  +HP  I EGY  A+RIA + ++ +        + L  + ++ MT   +  V      LA+  V+AV  V + +    H D ++
Sbjct:   14 EGTNRTHGRSAQDSNIRAGKAVAEAVRTTLGPRGMDKMLVDSSGEVVITNDGATILEKMDIEHPAAQMLVEVSQTQEEEVGDGTTTAAVLTGELLAHAEDLLDDDLHPTVIVEGYTEAARIAQDAIDDMVLDVTLDDDLLRKVAESSMTGKGTGDVT--ADVLAKHVVKAVQMVHEDDNGVFHRDDVR 199          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31
Identity = 72/177 (40.68%), Postives = 110/177 (62.15%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            ++ G D +  NV A  A+A ++++SLGP G+DKML    GDVT+TNDGATIL  +DV++   K++VEL++ QD E+GDGTT VV++A  LL +A +L++  IHP  I  GY +A R AV+ +  +       L   E L+    T+++SK++       + +AV A+L+V     KG
Sbjct:   16 KISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGK-ESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKG 191          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 74/170 (43.53%), Postives = 112/170 (65.88%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPD----GDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVL 640
            RG  A+ ++     A+  +++++LGPKGMDK+L S +    G + +TNDGATIL+ + VDN  AK++V++S +QD+E+GDGTT V V+A  LL++AEKL+ + IHP  I  GY  A  IA E L++     E G N  + L++   TTL SK++++ K   A++AV AVL
Sbjct:   15 RGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKK--SSIESGDNIRDDLLKIARTTLGSKILSQHKEHFAQLAVDAVL 182          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.439e-31
Identity = 72/172 (41.86%), Postives = 114/172 (66.28%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAV 646
            R +G D +  NV+A  A+A I+++SLGP+G+DKML    GDVTITNDGATIL Q++V +  AK++VELS+ QD E+GDGTT VV++A  LL++A +L++  +HP  I  G+++A++ A  +   I +     + +L  E L+    T+++SK++       ++I V AV +V
Sbjct:   11 RDQGQDVRTNNVTAVMAIANIVKSSLGPQGLDKMLVDDVGDVTITNDGATILRQLEVQHPAAKVIVELSQLQDKEVGDGTTSVVILAAELLKRANELIKNKVHPTSIITGFKIAAKEACTY---IKEHLAISVEELGREALINAAKTSMSSKLIGPESNLFSQIVVDAVESV 179          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.525e-30
Identity = 71/177 (40.11%), Postives = 107/177 (60.45%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            ++ G D +  NV A  AVA ++++SLGP G+DKML    GD T+TNDGATIL  +DV +   K++VEL++ QD EIGDGTT VV++A  LL++A +L++  IHP  I  G+ +A R A+  +  +       L   E L+    T+++SK++       + + V A+LAV     KG
Sbjct:   19 KISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGK-ETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKG 194          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 69/178 (38.76%), Postives = 114/178 (64.04%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            R+ G + +  NV A  A+A I++TS GP G+DKML    G + +TNDGATIL+++D+++  AK++V+LS  QD E+GDGTT VV++A  LL++A +L+ R +HP  I  G+ +A   A++++ E +A K E    D   +V    T+++SK +N      ++I ++A+  V  ++ KG
Sbjct:   12 RISGNEVRAQNVLAVTAIANIVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDF--IVNIAKTSMSSKTINDDSDFFSKIVIEAITRVKTIDYKG 187          
The following BLAST results are available for this feature:
BLAST of FC876370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
THSA_SULAC8.965e-3440.80Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]
TCPD_DICDI4.449e-3346.67T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPA_ARATH3.766e-3243.26T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
TCPA_SCHMA8.391e-3241.28T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
THS3_HALVO1.096e-3141.49Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPA_SCHPO2.441e-3140.68T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPB_CAEEL4.164e-3143.53T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPA_TETPY5.439e-3141.86T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
TCPA_YEAST3.525e-3040.11T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPA_DICDI4.604e-3038.76T-complex protein 1 subunit alpha OS=Dictyostelium... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004A02EF DevOvary1 Citrus clementina cDNA clone C32004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876370 ID=FC876370; Name=FC876370; organism=Citrus clementina; type=EST; length=690bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
CAAGCGCAGATTGGCTGAGATTGCTGTNCAAGCAGTTCTTGCTGTGGCAG
ACTTAGAGAGGAAGGGATGTCATTTAGATTTGATTAAGTG
back to top