FC876370
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 8.965e-34 Identity = 82/201 (40.80%), Postives = 130/201 (64.68%), Query Frame = 2 Query: 122 QEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLE------PLVQTCMTTLNSKMVNRCKR---RLAEIAVQAVLAVADLERKGCH---LDLIK 688 +E SR G DA + N+ A +A +L++SLGP+G+DKML GDVTITNDGATI+++M++ + AKL+VE +++QD E+GDGTT VV+AG LL++AE+LLE+ +HP I +GY+ A A+E +++++ K + +NDL L + TT++SK + ++ ++ + A+ VA+ G + LDLIK Sbjct: 9 KEGTSRSSGRDALRNNILAAVTLAEMLKSSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKAEELLEQNVHPTIIIDGYKKALTKALEIIDQLSLKID--VNDLSSPTAKAQLKKIVSTTMSSKFIAGGAEEIDKIIDLVIDAITIVAEKRPDGTYNVPLDLIK 207
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33 Identity = 77/165 (46.67%), Postives = 114/165 (69.09%), Query Frame = 2 Query: 152 DAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAV 646 D + +N+ A +AVA +RTSLGPKGMDKM+ SP+ +V I+NDGATIL+ +++ + AK++ EL+++QD E GDGTT V V+AGSLL +L+ +GIHP I+E + +A ++E L ++ L D LV++ T+LNSK+V++ LA IAV AVL+V Sbjct: 26 DVRTSNIVAARAVADAIRTSLGPKGMDKMIISPNNEVLISNDGATILQNLELRHPAAKMLAELAKAQDIEAGDGTTSVCVIAGSLLGAVSQLMAKGIHPSIISEAFNLALNKSLEVL--VSMSVPVSLTDRVSLVKSATTSLNSKVVSQ-YTNLASIAVDAVLSV 187
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32 Identity = 77/178 (43.26%), Postives = 116/178 (65.17%), Query Frame = 2 Query: 137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667 R G D + NV A +AV+ I++TSLGP G+DKML GDVTITNDGATIL ++V++ AK++VEL+ QD E+GDGTT VV++A LL++A L+ IHP I GY +A R + +++ E++ K E L + PL+ T+++SK+++ A + V+AVL+V ++G Sbjct: 14 RQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVE-KLGKV-PLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRG 189
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32 Identity = 71/172 (41.28%), Postives = 113/172 (65.70%), Query Frame = 2 Query: 137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAV 646 R G +K NV A + A ++TSLGP G+DKML GDVTITNDGATIL+ +DV++ AK++V+L++ QD E+GDGTT VV++A +LL+ A++L+ R +HP + GY +A R A ++++ + + +N L L+ T ++SK++N +++AV A++AV Sbjct: 8 RTSGESVRKQNVLAACSFANFVKTSLGPVGLDKMLVDDVGDVTITNDGATILKLLDVEHPAAKILVQLAQLQDEEVGDGTTSVVILAAALLKNADELISRFVHPTTVINGYRLACREACKYIQ---EHMAYDVNKLGKAGLINVARTAMSSKLINLDADMFSQMAVDALMAV 176
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.096e-31 Identity = 78/188 (41.49%), Postives = 116/188 (61.70%), Query Frame = 2 Query: 125 EEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688 E +R G AQ +N+ AGKAVA +RT+LGP+GMDKML G+V ITNDGATILE+MD+++ A+++VE+S++Q+ E+GDGTT V+ G LL AE LL+ +HP I EGY A+RIA + ++ + + L + ++ MT + V LA+ V+AV V + + H D ++ Sbjct: 14 EGTNRTHGRSAQDSNIRAGKAVAEAVRTTLGPRGMDKMLVDSSGEVVITNDGATILEKMDIEHPAAQMLVEVSQTQEEEVGDGTTTAAVLTGELLAHAEDLLDDDLHPTVIVEGYTEAARIAQDAIDDMVLDVTLDDDLLRKVAESSMTGKGTGDVT--ADVLAKHVVKAVQMVHEDDNGVFHRDDVR 199
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.441e-31 Identity = 72/177 (40.68%), Postives = 110/177 (62.15%), Query Frame = 2 Query: 137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667 ++ G D + NV A A+A ++++SLGP G+DKML GDVT+TNDGATIL +DV++ K++VEL++ QD E+GDGTT VV++A LL +A +L++ IHP I GY +A R AV+ + + L E L+ T+++SK++ + +AV A+L+V KG Sbjct: 16 KISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGK-ESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKG 191
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31 Identity = 74/170 (43.53%), Postives = 112/170 (65.88%), Query Frame = 2 Query: 143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPD----GDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVL 640 RG A+ ++ A+ +++++LGPKGMDK+L S + G + +TNDGATIL+ + VDN AK++V++S +QD+E+GDGTT V V+A LL++AEKL+ + IHP I GY A IA E L++ E G N + L++ TTL SK++++ K A++AV AVL Sbjct: 15 RGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESLKK--SSIESGDNIRDDLLKIARTTLGSKILSQHKEHFAQLAVDAVL 182
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.439e-31 Identity = 72/172 (41.86%), Postives = 114/172 (66.28%), Query Frame = 2 Query: 137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAV 646 R +G D + NV+A A+A I+++SLGP+G+DKML GDVTITNDGATIL Q++V + AK++VELS+ QD E+GDGTT VV++A LL++A +L++ +HP I G+++A++ A + I + + +L E L+ T+++SK++ ++I V AV +V Sbjct: 11 RDQGQDVRTNNVTAVMAIANIVKSSLGPQGLDKMLVDDVGDVTITNDGATILRQLEVQHPAAKVIVELSQLQDKEVGDGTTSVVILAAELLKRANELIKNKVHPTSIITGFKIAAKEACTY---IKEHLAISVEELGREALINAAKTSMSSKLIGPESNLFSQIVVDAVESV 179
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 3.525e-30 Identity = 71/177 (40.11%), Postives = 107/177 (60.45%), Query Frame = 2 Query: 137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667 ++ G D + NV A AVA ++++SLGP G+DKML GD T+TNDGATIL +DV + K++VEL++ QD EIGDGTT VV++A LL++A +L++ IHP I G+ +A R A+ + + L E L+ T+++SK++ + + V A+LAV KG Sbjct: 19 KISGDDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGK-ETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKG 194
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_DICDI (T-complex protein 1 subunit alpha OS=Dictyostelium discoideum GN=tcp1 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30 Identity = 69/178 (38.76%), Postives = 114/178 (64.04%), Query Frame = 2 Query: 137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHL-ERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667 R+ G + + NV A A+A I++TS GP G+DKML G + +TNDGATIL+++D+++ AK++V+LS QD E+GDGTT VV++A LL++A +L+ R +HP I G+ +A A++++ E +A K E D +V T+++SK +N ++I ++A+ V ++ KG Sbjct: 12 RISGNEVRAQNVLAVTAIANIVKTSFGPIGLDKMLIDNIGSIVVTNDGATILQKIDIEHPAAKILVQLSELQDQEVGDGTTTVVILAAELLKRANELVARKVHPTVIISGFRLACTEAIKYINETLAVKVETLPKDF--IVNIAKTSMSSKTINDDSDFFSKIVIEAITRVKTIDYKG 187 The following BLAST results are available for this feature:
BLAST of FC876370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 453
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876370 ID=FC876370; Name=FC876370; organism=Citrus clementina; type=EST; length=690bpback to top |