FC876370

Overview
NameFC876370
Unique NameFC876370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.013e-30
Identity = 77/196 (39.29%), Postives = 113/196 (57.65%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEF-GLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            R  + +  Q  K R +G  AQ AN+ A +AV+ I+RT+LGPK M KML  P G + +TNDG  IL ++DV +  AK M+EL+R+QD E+GDGTT V+++AG +L   E  LER IHP  I   Y  A    V   E   +  +    NDL+ +V +C+ T   K  ++    + ++AV+AV +V   E     +D+
Sbjct:    4 RAAVFILNQNAK-REQGRKAQTANIKAARAVSDIVRTTLGPKSMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELARAQDEEVGDGTTSVIILAGEILSAVESFLERDIHPTVIVGAYFQALEEIVRLTESYGEPIDIENENDLQKIVSSCIGT---KFSSKWGNLIVDLAVKAVKSVYKKEGDYVEIDV 195          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.853e-30
Identity = 72/187 (38.50%), Postives = 119/187 (63.64%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA--QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADL 655
            P ILL++  + S+  G     +N+SA + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   K E  +   + L +  MT L+SK++++ K   A++ V AV+ + DL
Sbjct:    5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 189          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.340e-29
Identity = 71/197 (36.04%), Postives = 114/197 (57.87%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y MA    +  L++I+   +  +N+ E ++    +++ +K+++R       IA+ AV  V   E     +D+ K
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTLKKISTPVD--VNNREMMLSIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKK 197          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 74/179 (41.34%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  I  GY +A + AV ++    I    E G    + L+    T+++SK++       A + V AVLAV   + KG
Sbjct:   11 RTTGESIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELG---KDCLINAAKTSMSSKIIGIDGDFFANMVVDAVLAVKYTDVKG 186          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 68/172 (39.53%), Postives = 112/172 (65.12%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL--EPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAV 646
            R  G   +  NV+A  A+A I+++SLGP G+DKML    GDV +TNDGATIL+Q++V++   K++VEL++ QD E+GDGTT VV++A  LL++A++L+++ +HP  I  GY +A + AV++   I++   F  + +  + +V    T+++SK++        E+ V A  AV
Sbjct:   15 RTTGQGIRSQNVTAAVAIANIVKSSLGPVGLDKMLVDDVGDVIVTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAVKY---ISENISFTSDSIGRQSVVNAAKTSMSSKIIGPDADFFGELVVDAAEAV 183          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.750e-29
Identity = 73/179 (40.78%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L  T  T+++SK++       A + V AVLAV   + +G
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINADELG---RDCLTNTAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARG 186          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.285e-29
Identity = 80/193 (41.45%), Postives = 115/193 (59.59%), Query Frame = 2
Query:  110 LLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM--VNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            LLR+  ++S   G +    N++  K +  +L++SLGPKG+DKML     DVTITNDGATI++ M+V +  AKL++E +++ D E+GDGTT VVV+AG LLE+AE LL + IHP  I EGY  A   ++E L+ IA K      D + +     TTL+SK         ++  + + A LAV D       LD+
Sbjct:    4 LLREGTQRST--GNEVILNNIAVAKILLEMLKSSLGPKGLDKMLVEGQ-DVTITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALNSSLELLKNIADK--ISPEDRKIVHDLVYTTLSSKFFSTEHTLEKIINLVIDASLAVLDKRDGSYDLDI 191          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.285e-29
Identity = 71/197 (36.04%), Postives = 114/197 (57.87%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y MA    V  L++I+   +  +N+ + ++    +++ +K+++R       IA+ AV  V   E     +D+ K
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMVSTLKKISTPVD--VNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKK 197          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 71/187 (37.97%), Postives = 118/187 (63.10%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA--QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADL 655
            P ILL++  + S+  G     +N+SA + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   K    +   + L +  MT L+SK++++ K   A++ V AV+ + DL
Sbjct:    5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 189          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.898e-29
Identity = 71/187 (37.97%), Postives = 118/187 (63.10%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA--QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADL 655
            P ILL++  + S+  G     +N+SA + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   K    +   + L +  MT L+SK++++ K   A++ V AV+ + DL
Sbjct:    5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 189          
The following BLAST results are available for this feature:
BLAST of FC876370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
TCPG_OXYGR6.013e-3039.29T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPH_BOVIN7.853e-3038.50T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
TCPG_MOUSE1.340e-2936.04T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPA_MONDO1.750e-2941.34T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPA_CAEEL1.750e-2939.53T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
TCPA1_MOUSE1.750e-2940.78T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
THSG_SULSO2.285e-2941.45Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
TCPG_RAT2.285e-2936.04T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPH_PONAB3.898e-2937.97T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_HUMAN3.898e-2937.97T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC32004A02EF DevOvary1 Citrus clementina cDNA clone C32004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876370 ID=FC876370; Name=FC876370; organism=Citrus clementina; type=EST; length=690bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
CAAGCGCAGATTGGCTGAGATTGCTGTNCAAGCAGTTCTTGCTGTGGCAG
ACTTAGAGAGGAAGGGATGTCATTTAGATTTGATTAAGTG
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