FC876370

Overview
NameFC876370
Unique NameFC876370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15063 contig Ccv1_Contig15063:47..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 79/193 (40.93%), Postives = 116/193 (60.10%), Query Frame = 2
Query:  110 LLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKM--VNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            LLR+  ++S   G +    N++  K +  +L++SLGPKG+DKML     D+TITNDGATI++ M+V +  AKL++E +++ D E+GDGTT VVV+AG LLE+AE LL + IHP  I EGY  A   ++E L+ IA K      D + +     TTL+SK         ++  + ++A LAV D       LD+
Sbjct:    4 LLREGTQRST--GNEVILNNIAVAKILLEMLKSSLGPKGLDKMLVEGQ-DITITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALSSSLELLKSIADK--ISPEDRKIVHDLVYTTLSSKFFSTEHTLEKIINLVIEASLAVLDKRDGTYDLDI 191          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 70/187 (37.43%), Postives = 118/187 (63.10%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEP---LVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVAD 652
            P +LL++  + ++ R    +  N++A + +  I++T+LGP+GMDK++ + + DVTITNDGAT++  +++ +  A ++V++++SQD E+GDGTT VVV+AG LL +A+ LL  GI P  I +G+  A  +A+  L  ++  F    N+ E    L++   T LNSK+V+  K    E+ V AV  + D
Sbjct:    8 PIVLLKEGTDTAQGRSQIIR--NINACQIIVDIVKTTLGPRGMDKLIYT-ERDVTITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACNVAINKLNELSLNFS-NKNEEEKRSILLKCAQTALNSKLVSNHKEFFGELVVNAVYKLGD 190          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPG_XENLA (T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 73/191 (38.22%), Postives = 110/191 (57.59%), Query Frame = 2
Query:   95 GRPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            GRP ++L Q  ++    G   Q  N++A K +A I+RT LGP+ M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE+ LE+ +HP  I   Y  A    V  L+ I+   +   ND E +++   + +N+K +         IA+ AV  V +LE  G
Sbjct:    3 GRPVLVLSQNMKRES--GRKVQSGNINAAKTIADIIRTCLGPRAMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEQFLEQQMHPTVIISAYRKALDDMVNTLKEISTPVD--TNDRELMLKIINSAINTKAIKLWADMACGIALDAVKTV-ELEENG 188          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 71/179 (39.66%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++       A + V AVLA+   + +G
Sbjct:   11 RSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELG---RDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDIRG 186          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.090e-29
Identity = 72/179 (40.22%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++       A + V AVLAV   + +G
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG---RDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDLRG 186          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 70/187 (37.43%), Postives = 119/187 (63.64%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA--QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADL 655
            P ILL++  + S+  G     +N+SA + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   K +  +   + L +  MT L+SK++++ K   A++ V AV+ + +L
Sbjct:    5 PVILLKEGTDSSQ--GIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVMMLDEL 189          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 74/174 (42.53%), Postives = 113/174 (64.94%), Query Frame = 2
Query:  143 RGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQS-PDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIA-------QKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVL 640
            RG +A+ ++     AV  +++++LGPKGMDK+LQS   GD+ +TNDGATIL+ + +DN  AK++V +S+ QD E+GDGTT V V A  LL QAE ++   IHP  I +GY +A++ A++ L   +        KF    +DLE + +   TTL+SK++++ K   A++AV AVL
Sbjct:   17 RGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSDPAKFR---SDLENIAR---TTLSSKILSQNKNHFAQLAVDAVL 184          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 72/179 (40.22%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++       A + V AVLAV   + +G
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELG---RDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDIRG 186          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 71/179 (39.66%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++       A + V AVLA+   + +G
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELG---RDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRG 186          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 71/179 (39.66%), Postives = 110/179 (61.45%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            R  G   +  NV A  ++A I+++S GP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L+++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++       A + V AVLAV   + +G
Sbjct:   11 RSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINTDELG---RDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARG 186          
The following BLAST results are available for this feature:
BLAST of FC876370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
THSG_SULSH5.090e-2940.93Thermosome subunit gamma OS=Sulfolobus shibatae GN... [more]
TCPH_PLAF75.090e-2937.43T-complex protein 1 subunit eta OS=Plasmodium falc... [more]
TCPG_XENLA5.090e-2938.22T-complex protein 1 subunit gamma OS=Xenopus laevi... [more]
TCPA_HUMAN5.090e-2939.66T-complex protein 1 subunit alpha OS=Homo sapiens ... [more]
TCPA_CRIGR5.090e-2940.22T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
TCPH_MOUSE6.648e-2937.43T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPB_SCHPO6.648e-2942.53Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPA_RAT6.648e-2940.22T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_BOVIN6.648e-2939.66T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPA2_MOUSE6.648e-2939.66T-complex protein 1 subunit alpha B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC32004A02EF DevOvary1 Citrus clementina cDNA clone C32004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876370 ID=FC876370; Name=FC876370; organism=Citrus clementina; type=EST; length=690bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
CAAGCGCAGATTGGCTGAGATTGCTGTNCAAGCAGTTCTTGCTGTGGCAG
ACTTAGAGAGGAAGGGATGTCATTTAGATTTGATTAAGTG
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