FC876370

Overview
NameFC876370
Unique NameFC876370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPG_TETPY (T-complex protein 1 subunit gamma OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.683e-29
Identity = 66/183 (36.07%), Postives = 114/183 (62.30%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAV 646
            +P ++L Q  ++    G  AQ AN+SA KAV+ I+ ++LGP+ M KML  P G + +TNDG  IL ++DV++  AK M+EL+R QD E+GDGTT V++MAG ++  A+  +ER IHP  I   Y  A   +++ +E +A   +  +N+ + + +   + + +K  +R  + + ++A++AV  +
Sbjct:    7 QPIMVLNQNTKRES--GKKAQLANISASKAVSEIVTSTLGPRSMLKMLLDPMGGIVMTNDGNAILREIDVNHPAAKSMIELARVQDEEVGDGTTSVIIMAGEMMSAAKPFIERDIHPSIIVTAYYRALEESIKKIEELAVPID--VNNDDQVNKALSSCIGTKFTSRWGKLITDLALKAVRTI 185          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.683e-29
Identity = 71/184 (38.59%), Postives = 110/184 (59.78%), Query Frame = 2
Query:  134 SRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLN-DLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDL 682
            +R  G  AQ +N+ A KAVA ++RT LGP+ M KML  P G V +TNDG  IL +++V +  AK M+EL+R+QD E+GDGTT V+++AG +L  A  LL+R IHP+ +   ++ A   A+  ++ I        N ++  L++TC+ T   K+V R    +  +A++AV  VA        +D+
Sbjct:   13 NRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITLPVNVDDNAEMFRLIRTCIGT---KLVARWSDLMCHLALRAVRTVASTSNGRMEIDI 193          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.683e-29
Identity = 71/197 (36.04%), Postives = 111/197 (56.35%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK MVE+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y  A    +  L++I+      +ND + ++    +++ +K ++R       IA+ AV  V   E     +D+ K
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMVEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDINDSDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQFEENGRKEIDIKK 197          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.683e-29
Identity = 71/179 (39.66%), Postives = 111/179 (62.01%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            R  G   +  NV+A   +A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ +++L+++ IHP  I  GY +A + AV ++    I    E G    + L+ +  T+++SK++       A + V A  AV   ++KG
Sbjct:   14 RSSGDTVRNQNVTAAATIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELG---RDCLINSAKTSMSSKIIGIDGDFFASMVVDAASAVKYTDQKG 189          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.481e-28
Identity = 71/179 (39.66%), Postives = 110/179 (61.45%), Query Frame = 2
Query:  137 RLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLER--IAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKG 667
            R  G   +  NV A  ++A I+++SLGP G+DKML    GDVTITNDGATIL+ ++V++  AK++ EL+  QD E+GDGTT VV++A  LL+ A++L ++ IHP  +  GY +A + AV ++    I    E G    + L+    T+++SK++       A + V AVLA+   + +G
Sbjct:   11 RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELGKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELG---RDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDTRG 186          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.526e-28
Identity = 69/187 (36.90%), Postives = 119/187 (63.64%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLE-PLVQTC-MTTLNSKMVNRCKRRLAEIAVQAVLAVADL 655
            P ILL++  + S+  G     +N++A + +A  +RT+LGP+GMDK++    G  TI+NDGATIL+ +DV +  AK +V++++SQD E+GDGTT V ++A   L+Q +  +E G+HP  I   +  A+++AV  ++ IA   +    D +  L++ C  T L+SK++++ K   +++ V AV+ + DL
Sbjct:    5 PVILLKEGTDTSQ--GIPQLVSNINACQVIAEAVRTTLGPRGMDKLIVDDRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKDIAVSVKKEDKDEQRSLLEKCAATALSSKLISQSKEFFSKMVVDAVMMLDDL 189          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 69/197 (35.03%), Postives = 111/197 (56.35%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+GDGTT V+++AG +L  AE  LE+ +HP  +   Y  A    +  L++I+      ++D + ++    +++ +K ++R       IA+ AV  V   E     +D+ K
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQFEENGRKEIDIKK 197          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 72/184 (39.13%), Postives = 112/184 (60.87%), Query Frame = 2
Query:  101 PFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLND-LEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVA 649
            P ++L  + ++S   G  AQ  N+ A +AVA I+R++LGP+ M KML  P G + ITNDG  IL ++DV +  AK M+ELSR+ D E+GDGTT V+++AG +L  AE  +   IHP  I  GY  A + A+   E  A   +   ++ ++ LVQ+C   + +K  +R    + ++A++AVL V+
Sbjct:    8 PIMVLNSKTQRST--GRQAQLGNIQAARAVADIIRSTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVSHPTAKSMIELSRAHDEEVGDGTTSVIILAGEMLINAEPFVRTNIHPTIIVRGYNYALQEALTICEEWALVVDVHDSERVKSLVQSC---IGAKFSSRWNDIMIDMALKAVLTVS 186          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 69/197 (35.03%), Postives = 110/197 (55.84%), Query Frame = 2
Query:   98 RPFILLRQQEEKSRLRGPDAQKANVSAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDLEPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAVADLERKGCHLDLIK 688
            RP ++L Q  ++    G   Q  N++A K +A I+RT LGPK M KML  P G + +TNDG  IL ++ V +  AK M+E+SR+QD E+G GTT V+++AG +L  AE  LE+ +HP  +   Y  A    +  L++I+      +ND + ++    +++ +K ++R       IA+ AV  V   E     +D+ K
Sbjct:    5 RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGGGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKIS--IPVDINDSDMMLNIINSSITTKAISRWSSLACNIALDAVKTVQFEENGRKEIDIKK 197          
BLAST of FC876370 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 77/187 (41.18%), Postives = 117/187 (62.57%), Query Frame = 2
Query:  155 AQKANVSA---GKAVARILRTSLGPKGMDKMLQSPDGDVT-ITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGSLLEQAEKLLERG-IHPIRIAEGYEMASRIAVEHLERIAQKFEFGLNDL-EPLVQTCMTTLNSKMVNRCKRRLAEIAVQAVLAV---ADLERKGCHLDLIK 688
            A+ A +SA     AV  +++++LGPKGMDK+LQS   +   +TNDGATIL+ + +DN  AK++V +S+ QD E+GDGTT V V++  LL +AEKL+++  IHP  I EGY +AS  A++ L + A           E L+    TTL+SK++++ K   AE+A  A+L +    +LE    H+ +IK
Sbjct:   15 AENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNAILRLKGSTNLE----HIQIIK 197          
The following BLAST results are available for this feature:
BLAST of FC876370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 453
Match NameE-valueIdentityDescription
TCPG_TETPY8.683e-2936.07T-complex protein 1 subunit gamma OS=Tetrahymena p... [more]
TCPG_SCHPO8.683e-2938.59T-complex protein 1 subunit gamma OS=Schizosacchar... [more]
TCPG_PONAB8.683e-2936.04T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPA_PALPA8.683e-2939.66T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
TCPA_MACFA1.481e-2839.66T-complex protein 1 subunit alpha OS=Macaca fascic... [more]
TCPH_CHICK2.526e-2836.90T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPG_HUMAN4.309e-2835.03T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPG_THAWE5.628e-2839.13T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPG_MACFA5.628e-2835.03T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
TCPB_YEAST5.628e-2841.18T-complex protein 1 subunit beta OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC32004A02EF DevOvary1 Citrus clementina cDNA clone C32004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876370 ID=FC876370; Name=FC876370; organism=Citrus clementina; type=EST; length=690bp
GACTCTTCTTGTGAAGAGAAGTGGAAGGGGGAGAGGAAGCAGCAGCTGTG
AGAATCAAGGATAGGAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGA
CCGTTCATATTATTAAGGCAGCAAGAAGAGAAGTCCAGATTGCGCGGACC
CGATGCTCAGAAAGCCAACGTTTCGGCCGGCAAAGCAGTGGCTCGGATCC
TCCGAACCTCCCTCGGACCCAAAGGCATGGACAAGATGCTCCAAAGCCCC
GACGGTGACGTCACCATTACAAATGATGGTGCCACAATCCTGGAGCAGAT
GGATGTTGACAATCAAATTGCAAAGCTGATGGTTGAATTGTCTCGGAGTC
AGGACTATGAAATTGGTGATGGTACAACTGGCGTTGTTGTTATGGCTGGT
TCACTTTTAGAGCAAGCTGAGAAGCTTTTGGAACGGGGAATTCATCCTAT
TCGGATTGCAGAGGGCTATGAAATGGCTTCTAGAATAGCTGTTGAACATT
TAGAACGTATAGCTCAGAAGTTTGAGTTCGGGTTGAATGACTTGGAGCCT
TTGGTTCAAACTTGCATGACTACTTTAAATTCGAAAATGGTGAATCGTTG
CAAGCGCAGATTGGCTGAGATTGCTGTNCAAGCAGTTCTTGCTGTGGCAG
ACTTAGAGAGGAAGGGATGTCATTTAGATTTGATTAAGTG
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