FC876373

Overview
NameFC876373
Unique NameFC876373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14593 contig Ccv1_Contig14593:51..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC4_RAT (Chloride intracellular channel protein 4 OS=Rattus norvegicus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 55/216 (25.46%), Postives = 99/216 (45.83%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D +     +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K+    F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPAHLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPGEIDENSMEDIKSSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNT 233          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC4_PONAB (Chloride intracellular channel protein 4 OS=Pongo abelii GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 55/216 (25.46%), Postives = 98/216 (45.37%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D +     +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVSTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNT 233          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC4_MOUSE (Chloride intracellular channel protein 4 OS=Mus musculus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 55/216 (25.46%), Postives = 98/216 (45.37%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D +     +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNT 233          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC4_BOVIN (Chloride intracellular channel protein 4 OS=Bos taurus GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 55/216 (25.46%), Postives = 98/216 (45.37%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+++   D +     +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNNEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNT 233          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC4_HUMAN (Chloride intracellular channel protein 4 OS=Homo sapiens GN=CLIC4 PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 55/216 (25.46%), Postives = 97/216 (44.91%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D +     +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +  Y    ++ + F  T
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNT 233          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC2_HUMAN (Chloride intracellular channel protein 2 OS=Homo sapiens GN=CLIC2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 58/217 (26.73%), Postives = 101/217 (46.54%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            +E+ VKA      I G+CPF QR  + L  K V +    ++++ KP+   +++P    P + ++ +   D       +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL+E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y    +A E F  T
Sbjct:   14 IELFVKAGSDGESI-GNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFTHT 228          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC5_RAT (Chloride intracellular channel protein 5 OS=Rattus norvegicus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.172e-14
Identity = 58/223 (26.01%), Postives = 104/223 (46.64%), Query Frame = 3
Query:   54 RKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 653
            R   +E+ VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D +     +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F  T A
Sbjct:   12 RDPEIELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAARH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNTPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 232          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC5_MOUSE (Chloride intracellular channel protein 5 OS=Mus musculus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.172e-14
Identity = 58/223 (26.01%), Postives = 104/223 (46.64%), Query Frame = 3
Query:   54 RKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 653
            R   +E+ VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D +     +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F  T A
Sbjct:   12 RDPEIELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNSPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 232          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: CLIC2_RAT (Chloride intracellular channel protein 2 OS=Rattus norvegicus GN=Clic2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 59/217 (27.19%), Postives = 99/217 (45.62%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVTVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKT 647
            +E+ VKA      I G+CPF QR  + L  K V +    I+ + KP+   +++P    P + ++ +   D       +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V  Y    +A E F  T
Sbjct:   14 IELFVKAGSDGESI-GNCPFCQRLFMILWLKGVKFNVTTIDTARKPEELKDLAPGTNPPFLIYNKELKTDFIKIEEFLEKTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLREFKRLDDYLNTPLLDEIDPDSTEERTLSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGVWRYLHNAYAREEFAHT 228          
BLAST of FC876373 vs. ExPASy Swiss-Prot
Match: GSTO1_MOUSE (Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 54/171 (31.58%), Postives = 84/171 (49.12%), Query Frame = 3
Query:  117 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVTVRIIEEKYPEPSLTNPPEFASVG--------SKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAH 596
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      V +S +T   ++E YPE  L     +            SK+ P   +F++SK   D     +AL  E K L+E +  +   F+ G+  + VD    P    L+ ALE      + E LAH
Sbjct:   32 CPFAQRTLMVLKAKGIRHEVININLKNKPEWFFEKNPLGLVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYKKARQKMTLESFSKVPPLIASFVRSKRKEDSPNLREALENEFKKLEEGMDNYKS-FLGGDSPSMVDYLTWPWFQRLE-ALE------LKECLAH 194          
The following BLAST results are available for this feature:
BLAST of FC876373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CLIC4_RAT8.472e-1525.46Chloride intracellular channel protein 4 OS=Rattus... [more]
CLIC4_PONAB1.887e-1425.46Chloride intracellular channel protein 4 OS=Pongo ... [more]
CLIC4_MOUSE3.219e-1425.46Chloride intracellular channel protein 4 OS=Mus mu... [more]
CLIC4_BOVIN3.219e-1425.46Chloride intracellular channel protein 4 OS=Bos ta... [more]
CLIC4_HUMAN4.204e-1425.46Chloride intracellular channel protein 4 OS=Homo s... [more]
CLIC2_HUMAN4.204e-1426.73Chloride intracellular channel protein 2 OS=Homo s... [more]
CLIC5_RAT7.172e-1426.01Chloride intracellular channel protein 5 OS=Rattus... [more]
CLIC5_MOUSE7.172e-1426.01Chloride intracellular channel protein 5 OS=Mus mu... [more]
CLIC2_RAT1.223e-1327.19Chloride intracellular channel protein 2 OS=Rattus... [more]
GSTO1_MOUSE1.766e-1231.58Glutathione S-transferase omega-1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC32004A06EF DevOvary1 Citrus clementina cDNA clone C32004A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876373 ID=FC876373; Name=FC876373; organism=Citrus clementina; type=EST; length=653bp
GGTTGTCGGGTTTTCACTAACAGCAACATACACTCTCTCTGATCACTCAA
TTCCGCAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGGCGCTCC
TGATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTACTTTGG
AGGAAAAGAAAGTTCCATACAAGCGTCACCTCATCAATATCAGTGACAAG
CCTCAATGGTTTTTGGAGATAAGCCCAGAAGGGAAAGTACCTGTGGTAAA
GTTTGATGACAAGTGGGTGGCTGACTCTGATGTGACTGTTAGAATTATTG
AGGAGAAGTATCCTGAGCCTTCTCTTACTAATCCTCCTGAATTTGCCTCT
GTTGGATCAAAGATATTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGGA
CCCAAATGATGGGACAGAGCAAGCTTTGCTGGAGGAATTGAAAGCATTGG
ATGAGCATCTTAAGACTCATGGAGGTCCATTCATTGCTGGAGAGAAGGTC
ACTGCTGTAGATTTGAGCTTGGCACCAAAGCTGTACCACCTTCAGGTAGC
TCTTGAACATTTCAAGCAGTGGACTGTCCCTGAGAGCTTGGCTCATGTCC
ATGGGTACACGAAGAAGCTTTTTGCTCTGGAATCCTTTCAGAAGACTAAG
GCT
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