FC876377

Overview
NameFC876377
Unique NameFC876377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PAL3_PHAVU (Phenylalanine ammonia-lyase class 3 OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.953e-90
Identity = 175/247 (70.85%), Postives = 205/247 (83.00%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGG-ETLTVAQVAAIATS--STNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALCHGTAVGSGLAS 728
            D LNWG   E+LKGSHLEEVK MVAEYR+ V+++GG ETLTV++VAA+A       V+LSESAREGV +S  W++++++KG   YGVTTGFGA S+R+T+ G ALQKE++RFLN  IFG  TE SHTLP SATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHN+TP LPLRGTITASGDL+PLSYIA LL GR NSKA GP+GE ++A+EA   AG   GFFEL+PKEGLAL +GTAVGSG+AS
Sbjct:   20 DPLNWGNAVESLKGSHLEEVKGMVAEYREAVIHVGGGETLTVSKVAAVANQYLQAKVDLSESAREGVDSSCKWIVDNIDKGIPIYGVTTGFGANSNRQTQEGLALQKEMVRFLNCAIFGYQTELSHTLPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNVTPILPLRGTITASGDLIPLSYIAALLIGRRNSKAVGPSGESLNAKEAFHLAGVDGGFFELKPKEGLALVNGTAVGSGVAS 266          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PAL1_ORYSJ (Phenylalanine ammonia-lyase OS=Oryza sativa subsp. japonica GN=PAL PE=1 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 9.388e-85
Identity = 163/248 (65.73%), Postives = 191/248 (77.02%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIA----TSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALCHGTAVGSGLAS 728
            D LNWG  A  + GSHL+EVKRMVA++R+P+V + G TL V QVAA+A     +   VEL E AR  VKASS+W++  +  G D YGVTTGFG TSHRRTK+G ALQ EL+R LNAGIFG G++  HTLP    RAAMLVR+NTLLQGYSGIRFEILEAITKLLN  +TPCLPLRGTITASGDLVPLSYIAGL+ GRPN++A  P+G  +DA EA K AG   GFF L PKEGLA+ +GT+VGS LA+
Sbjct:   11 DPLNWGAAAAEMAGSHLDEVKRMVAQFREPLVKIQGATLRVGQVAAVAQAKDAAGVAVELDEEARPRVKASSEWILNCIAHGGDIYGVTTGFGGTSHRRTKDGPALQVELLRHLNAGIFGTGSDG-HTLPSETVRAAMLVRINTLLQGYSGIRFEILEAITKLLNTGVTPCLPLRGTITASGDLVPLSYIAGLITGRPNAQAISPDGRKVDAAEAFKLAGIEGGFFTLNPKEGLAIVNGTSVGSALAA 257          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PALY_PERAE (Phenylalanine ammonia-lyase OS=Persea americana GN=PAL PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.708e-74
Identity = 144/173 (83.24%), Postives = 152/173 (87.86%), Query Frame = 3
Query:  216 MESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALCHGTAVGSGLAS 728
            MESM+KGTDSYGVTTGFGATSHRRTK GGAL KELIRFLNAGIFG   ES HTL  SATRAAMLVR+NTLLQGYSGIRFEILEAIT LLNH+ITPCLPLRGTITASGDLVPLSYIAG+L GRPNSK   P+G+ IDA EA + AG   GFFELQPKEGLAL +GTAVGSGLAS
Sbjct:    1 MESMDKGTDSYGVTTGFGATSHRRTKQGGALHKELIRFLNAGIFGTNGESGHTLAPSATRAAMLVRINTLLQGYSGIRFEILEAITSLLNHSITPCLPLRGTITASGDLVPLSYIAGMLTGRPNSKGDWPDGKEIDAGEAFRLAGIPSGFFELQPKEGLALVNGTAVGSGLAS 173          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PALY_PINTA (Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.609e-68
Identity = 144/246 (58.54%), Postives = 178/246 (72.36%), Query Frame = 3
Query:    3 DALNWGVMAETLKGSHLEEVKRMVAEY-RKPVVNLGGETLTVAQVAAIAT-SSTNVEL-SESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGF-FELQPKEGLALCHGTAVGSGLAS 728
            D LNW   A+ ++GSH EEVK MV  Y     +++ G++LT++ VAA+A  S   V+L + +A+  V+ SS+WV+  M KGTD+YGVTTGFGATSHRRT  G  LQKELIRFLNAG+ G   E+   L    TRAAMLVR NTLLQGYSG+R++ILE + KLLN  +TP LPLRGTITASGDLVPLSYIAGLL GRPNS+    +G  +   EA K+ G    FELQPKEGLA+ +GT+VG+ LAS
Sbjct:   30 DPLNWVRAAKAMEGSHFEEVKAMVDSYFGAKEISIEGKSLTISDVAAVARRSQVKVKLDAAAAKSRVEESSNWVLTQMTKGTDTYGVTTGFGATSHRRTNQGAELQKELIRFLNAGVLGKCPEN--VLSEDTTRAAMLVRTNTLLQGYSGVRWDILETVEKLLNAWLTPKLPLRGTITASGDLVPLSYIAGLLTGRPNSRVRSRDGIEMSGAEALKKVGLEKPFELQPKEGLAIVNGTSVGAALAS 273          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PAL4_POPKI (Phenylalanine ammonia-lyase G4 (Fragment) OS=Populus kitakamiensis GN=PALG4 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.255e-53
Identity = 107/124 (86.29%), Postives = 112/124 (90.32%), Query Frame = 3
Query:  363 SSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGF--GFFELQPKEGLALCHGTAVGSGLAS 728
            S+HTLPHSA+RAAMLVR+NTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLL GRPNSKA GPNGE + A EA   AG   GFFELQPKEGLAL +GTAVGSGLAS
Sbjct:    1 STHTLPHSASRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGETMAAAEAFTLAGINGGFFELQPKEGLALVNGTAVGSGLAS 124          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PALY_RHORB (Phenylalanine ammonia-lyase OS=Rhodotorula rubra GN=PAL PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 100/249 (40.16%), Postives = 147/249 (59.04%), Query Frame = 3
Query:   18 GVMAETLKGSHLEEVKRMVAEY-RKPVVNLGGETLTVAQVAAIATSSTNVELSESA--REGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIF---------GNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLAS 728
            G +  T + + L+ V+R++A+      + L G TLT+  V   A    +V++++S   RE + AS +++   ++     YGVTTGFG ++  RT++  +LQK L+     G+          G G E+S  LP    R AM +RVN+L +G+S +R  +LEA+T  LNH ITP +PLRGTI+ASGDL PLSYIA  + G P+SK    +G+I+ AQEA    G     L PKEGL L +GTAV + +A+
Sbjct:   39 GSLLPTTETTQLDIVERILADAGATDQIKLDGYTLTLGDVVGAARRGRSVKVADSPHIREKIDASVEFLRTQLDNSV--YGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPTSMDGFALGRGLENS--LPLEVVRGAMTIRVNSLTRGHSAVRIVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAASITGHPDSK-VHVDGKIMSAQEAIALKGLQPVVLGPKEGLGLVNGTAVSASMAT 282          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PALY_RHOTO (Phenylalanine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.680e-33
Identity = 91/246 (36.99%), Postives = 137/246 (55.69%), Query Frame = 3
Query:   33 TLKGSHLEEVKRMVAEYRKPVVNLGGETLTVAQVAAIATSSTNVELSES--AREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIF---------GNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSK---ATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLAS 728
            T + + ++ V++M+A      + L G +L +  V + A     V + +S   R  +  S +++   ++     YGVTTGFG ++  RT++  +LQK L+     G+          G G E+S  LP    R AM +RVN+L +G+S +R  +LEA+T  LNH ITP +PLRGTI+ASGDL PLSYIA  ++G P+SK         +I+ A+EA          L PKEGL L +GTAV + +A+
Sbjct:   39 TTQVTQVDIVEKMLAAPTDSTLELDGYSLNLGDVVSAARKGRPVRVKDSDEIRSKIDKSVEFLRSQLSMSV--YGVTTGFGGSADTRTEDAISLQKALLEHQLCGVLPSSFDSFRLGRGLENS--LPLEVVRGAMTIRVNSLTRGHSAVRLVVLEALTNFLNHGITPIVPLRGTISASGDLSPLSYIAAAISGHPDSKVHVVHEGKEKILYAREAMALFNLEPVVLGPKEGLGLVNGTAVSASMAT 280          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: PALY_AMAMU (Phenylalanine ammonia-lyase OS=Amanita muscaria GN=PAL PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.019e-30
Identity = 88/253 (34.78%), Postives = 141/253 (55.73%), Query Frame = 3
Query:   24 MAETLKGSHLEEVKRMVAEYRKP-VVNLGGETLTVAQVAAIATSSTNVELSES--AREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGGALQKELIRFLNAGIFGNGTE----------SSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKA-TGPNGEIIDAQEASKQA----GFGFFELQPKEGLALCHGTAVGSGLAS 728
            M +T   S   E  R +  Y+    + + G+TL++A VAA A  +  VEL ES   +E V+ S   +   ++ G   YG++TGFG ++  RT     L   L++  + GI    TE          ++ ++P +  R A+L+R+N+L++G+SGIR+E++E + +LL  N+ P +PLRG+I++SGDL PLSYIAG + G P+ K   GP+   I    +SK          F L+ KE L + +GTA  + +A+
Sbjct:   43 MTKTSALSQFLEAYRELEGYKNGRAIKVDGQTLSIAAVAAAARYNAAVELDESPLVKERVRKSQLAIANKVSTGASVYGLSTGFGGSADTRTDKPMLLGFALLQHQHVGILPTSTEPLDVLPLQDANNTSMPEAWIRGAILIRMNSLIRGHSGIRWELIEKMRELLAANVIPVVPLRGSISSSGDLSPLSYIAGTIIGNPSIKVYHGPSKSGIRQIGSSKDVLALHNIEPFPLESKEPLGILNGTAFSASVAA 295          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_STRGC (Histidine ammonia-lyase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=hutH PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.279e-29
Identity = 80/214 (37.38%), Postives = 125/214 (58.41%), Query Frame = 3
Query:   93 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLAS 728
            V+NL GE LT+  V A+A      E+ + A++ V+AS   V + + +    YGVTTGFG+  +     ++   LQ+ LIR   +G FG+       LP  A RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G  ++      G+++  QEA  +AG     L  KEGLAL +GT V +G+ +
Sbjct:    4 VINLDGEHLTLEDVIAVARHGATCEIDQEAKKAVEASRKIVDDIVREKRVVYGVTTGFGSLCNVSISPEDTTQLQENLIRTHASG-FGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTVEKLLELLNKGVVPFIPEKGSLGASGDLAPLAHMVLPMLGLGHAYY---QGQLLSGQEALDKAGIEKIALAAKEGLALINGTTVLTGIGA 207          
BLAST of FC876377 vs. ExPASy Swiss-Prot
Match: HUTH_STRSV (Histidine ammonia-lyase OS=Streptococcus sanguinis (strain SK36) GN=hutH PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.283e-29
Identity = 79/214 (36.92%), Postives = 125/214 (58.41%), Query Frame = 3
Query:   93 VVNLGGETLTVAQVAAIATSSTNVELSESAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRT--KNGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLAGRPNSKATGPNGEIIDAQEASKQAGFGFFELQPKEGLALCHGTAVGSGLAS 728
            V+NL GE LT+  V A+A      E+ + A++ V+AS   V + + +    YGVTTGFG+  +     ++   LQ+ LIR  ++G +G+       LP  A RA ML+R+N+L++GYSGIR   +E + +LLN  + P +P +G++ ASGDL PL+++   + G   +      G+++  QEA  +AG     L  KEGLAL +GT V +G+ +
Sbjct:    4 VINLDGEHLTLEDVIAVARHGATCEIDQEAKKAVEASRKIVDDIVREKRVVYGVTTGFGSLCNVSISPEDTTQLQENLIRTHSSG-YGD------PLPEDAVRAIMLIRINSLVKGYSGIRLSTVEKLLELLNKGVVPYIPEKGSLGASGDLAPLAHMVLPMLGLGRAYY---QGQLLSGQEALDKAGIEKIALAAKEGLALINGTTVLTGIGA 207          
The following BLAST results are available for this feature:
BLAST of FC876377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
PAL3_PHAVU1.953e-9070.85Phenylalanine ammonia-lyase class 3 OS=Phaseolus v... [more]
PAL1_ORYSJ9.388e-8565.73Phenylalanine ammonia-lyase OS=Oryza sativa subsp.... [more]
PALY_PERAE5.708e-7483.24Phenylalanine ammonia-lyase OS=Persea americana GN... [more]
PALY_PINTA1.609e-6858.54Phenylalanine ammonia-lyase OS=Pinus taeda GN=PAL ... [more]
PAL4_POPKI7.255e-5386.29Phenylalanine ammonia-lyase G4 (Fragment) OS=Popul... [more]
PALY_RHORB1.328e-3840.16Phenylalanine ammonia-lyase OS=Rhodotorula rubra G... [more]
PALY_RHOTO1.680e-3336.99Phenylalanine ammonia-lyase OS=Rhodosporidium toru... [more]
PALY_AMAMU1.019e-3034.78Phenylalanine ammonia-lyase OS=Amanita muscaria GN... [more]
HUTH_STRGC3.279e-2937.38Histidine ammonia-lyase OS=Streptococcus gordonii ... [more]
HUTH_STRSV4.283e-2936.92Histidine ammonia-lyase OS=Streptococcus sanguinis... [more]

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Properties
Property NameValue
Genbank descriptionC32004A10EF DevOvary1 Citrus clementina cDNA clone C32004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876377 ID=FC876377; Name=FC876377; organism=Citrus clementina; type=EST; length=728bp
GGGATGCGTTGAACTGGGGAGTGATGGCGGAGACGTTGAAGGGGAGCCAT
TTGGAGGAAGTGAAGCGTATGGTGGCGGAGTACAGGAAGCCGGTGGTCAA
CCTCGGTGGTGAGACGTTGACCGTAGCACAGGTGGCTGCCATTGCCACGT
CCTCTACGAATGTGGAGCTGTCGGAATCTGCCAGGGAAGGCGTCAAGGCC
AGCAGTGATTGGGTGATGGAGAGCATGAATAAGGGTACCGACAGTTACGG
CGTTACCACTGGCTTTGGTGCCACTTCTCATCGGAGAACCAAGAACGGCG
GTGCTCTTCAGAAGGAGCTCATTAGATTTTTGAACGCTGGAATCTTTGGA
AACGGAACAGAGTCATCTCACACGCTACCTCACTCAGCAACAAGGGCAGC
CATGCTTGTGAGGGTTAACACTCTTCTCCAGGGCTACTCCGGCATCCGAT
TTGAAATCCTGGAAGCGATCACAAAGCTGCTCAATCACAACATCACTCCA
TGCCTCCCTCTTCGCGGCACAATCACTGCTTCAGGGGATCTGGTTCCTCT
TTCCTACATTGCCGGACTGCTCGCCGGCCGGCCCAATTCTAAGGCCACCG
GGCCTAATGGAGAGATCATTGATGCCCAGGAAGCCTCTAAACAAGCGGGT
TTCGGGTTCTTTGAGTTGCAGCCTAAGGAGGGTCTTGCTCTTTGTCATGG
CACTGCTGTTGGTTCTGGCCTGGCTTCT
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