FC876383

Overview
NameFC876383
Unique NameFC876383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_PSEA7 (Chaperone protein htpG OS=Pseudomonas aeruginosa (strain PA7) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 58/113 (51.33%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +S+ ++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA  K+RFE+L +   L+   EL I +  DK  NT+++ D+GIGM++ D+V +LGTIA+SGT +F++ L+
Sbjct:    1 MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFEALANPELLEGGAELKIRVSFDKEANTVTLEDNGIGMSREDVVTHLGTIAKSGTADFLKNLS 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_BURTA (Chaperone protein htpG OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 58/106 (54.72%), Postives = 80/106 (75.47%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +T +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA  K+RFE+L + +  ++ P L I +  DK   TL+I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 QTMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEALENNALYESDPNLRIRLSFDKAARTLTIDDNGIGMSRDEAIANLGTIARSGTKEFFSKLS 109          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_BURS3 (Chaperone protein htpG OS=Burkholderia sp. (strain 383) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 59/106 (55.66%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ET +FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA  K+RFE L D +  +  P + I I  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFEGLADNALYEDDPNVRIRIGYDKAARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFTKLS 109          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_BORPA (Chaperone protein htpG OS=Bordetella parapertussis GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 59/108 (54.63%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            S +ET  FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA  K+RFE++     LD   EL I +  DK   T++I D+GIG+++ + V NLGTIARSGT+EF   L
Sbjct:    8 SASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPGLLDGDGELAIRVDYDKAARTITISDNGIGLSRDEAVANLGTIARSGTREFFSQL 115          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_BORBR (Chaperone protein htpG OS=Bordetella bronchiseptica GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 59/108 (54.63%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            S +ET  FQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA  K+RFE++     LD   EL I +  DK   T++I D+GIG+++ + V NLGTIARSGT+EF   L
Sbjct:    8 SASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPGLLDGDGELAIRVDYDKAARTITISDNGIGLSRDEAVANLGTIARSGTREFFSQL 115          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_AERS4 (Chaperone protein htpG OS=Aeromonas salmonicida (strain A449) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 56/113 (49.56%), Postives = 83/113 (73.45%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ++ +   ET  FQ E+ QLLSL+ ++ YSNKE+FLRELISN+SDA  K+RF++L+D S  +   +L + ++ DK N TL+I D+GIGMT+  ++ +LGTIA+SGT EF + L+
Sbjct:    1 MTQSVHAETHGFQTEVKQLLSLMAHSLYSNKEVFLRELISNASDAADKLRFKALSDASLFENDGQLRVRLVVDKENRTLTISDNGIGMTRDQVIEHLGTIAKSGTAEFFKNLS 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_AERHH (Chaperone protein htpG OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=htpG PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.812e-26
Identity = 56/113 (49.56%), Postives = 83/113 (73.45%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ++ +   ET  FQ E+ QLLSL+ ++ YSNKE+FLRELISN+SDA  K+RF++L+D S  +   +L + ++ DK N TL+I D+GIGMT+  ++ +LGTIA+SGT EF + L+
Sbjct:    1 MTQSVHAETHGFQTEVKQLLSLMAHSLYSNKEVFLRELISNASDAADKLRFKALSDASLFENDGQLRVRLVVDKENRTLTISDNGIGMTRDQVIEHLGTIAKSGTAEFFKNLS 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_RALSO (Chaperone protein htpG OS=Ralstonia solanacearum GN=htpG PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.978e-26
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 3
Query:  117 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            M +  E  AFQAE+ QLL L+I++ YSNKEIFLREL+SN+SDA+ K+RFE + D S L+   EL I I  D    T++I D+GIGM++ + + NLGTIARSGT+EF   L+
Sbjct:    1 MGAPHEKMAFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDAVDKLRFEGIADPSLLEGGGELGIRIGFDAQARTVTIADNGIGMSRDEAIRNLGTIARSGTREFFSQLS 111          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_MARMS (Chaperone protein htpG OS=Marinomonas sp. (strain MWYL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.978e-26
Identity = 60/113 (53.10%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  117 MASET--ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            MA++T  ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA+ K+RFES+ +   L   P L + I  DK  NT+ I D+G+GM++ + + NLGTIA+SGT  F+E L+
Sbjct:    1 MATDTQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFESVANADLLAEDPNLRVRIEFDKDTNTVVIDDNGVGMSREEAITNLGTIAKSGTSAFLEQLS 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_IDILO (Chaperone protein htpG OS=Idiomarina loihiensis GN=htpG PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.978e-26
Identity = 56/110 (50.91%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  120 ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            A + E   FQ E+ QLL L+I++ YSNKEIFLREL+SN+SDA  K+RF++L+D S      +L + +  DK + T++I D+G+GMT+ D++NNLGTIA+SGT EF   L+
Sbjct:    4 AGQMEKHGFQTEVKQLLHLMIHSLYSNKEIFLRELVSNASDAADKLRFKALSDNSLYGDDSDLHVRVSVDKDSRTITISDNGVGMTRDDVMNNLGTIAKSGTAEFFGQLS 113          
The following BLAST results are available for this feature:
BLAST of FC876383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_PSEA73.812e-2651.33Chaperone protein htpG OS=Pseudomonas aeruginosa (... [more]
HTPG_BURTA3.812e-2654.72Chaperone protein htpG OS=Burkholderia thailandens... [more]
HTPG_BURS33.812e-2655.66Chaperone protein htpG OS=Burkholderia sp. (strain... [more]
HTPG_BORPA3.812e-2654.63Chaperone protein htpG OS=Bordetella parapertussis... [more]
HTPG_BORBR3.812e-2654.63Chaperone protein htpG OS=Bordetella bronchiseptic... [more]
HTPG_AERS43.812e-2649.56Chaperone protein htpG OS=Aeromonas salmonicida (s... [more]
HTPG_AERHH3.812e-2649.56Chaperone protein htpG OS=Aeromonas hydrophila sub... [more]
HTPG_RALSO4.978e-2654.05Chaperone protein htpG OS=Ralstonia solanacearum G... [more]
HTPG_MARMS4.978e-2653.10Chaperone protein htpG OS=Marinomonas sp. (strain ... [more]
HTPG_IDILO4.978e-2650.91Chaperone protein htpG OS=Idiomarina loihiensis GN... [more]

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Properties
Property NameValue
Genbank descriptionC32004B04EF DevOvary1 Citrus clementina cDNA clone C32004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876383 ID=FC876383; Name=FC876383; organism=Citrus clementina; type=EST; length=467bp
GGAAACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTT
CGCTTCCAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGG
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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