FC876383

Overview
NameFC876383
Unique NameFC876383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_PSEU2 (Chaperone protein htpG OS=Pseudomonas syringae pv. syringae (strain B728a) GN=htpG PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 8.491e-26
Identity = 57/113 (50.44%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +S+ ++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA+ K+RFE+L+    L+   EL I +  DK   T+++ D+GIGM++ D++ +LGTIA+SGT +FM+ L+
Sbjct:    1 MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGGAELKIRVSFDKDAKTVTLEDNGIGMSREDVITHLGTIAKSGTADFMKNLS 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_PSE14 (Chaperone protein htpG OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.491e-26
Identity = 57/113 (50.44%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +S+ ++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA+ K+RFE+L+    L+   EL I +  DK   T+++ D+GIGM++ D++ +LGTIA+SGT +FM+ L+
Sbjct:    1 MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGGAELKIRVSFDKDAKTVTLEDNGIGMSREDVITHLGTIAKSGTADFMKNLS 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_SHIDS (Chaperone protein htpG OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.109e-25
Identity = 56/107 (52.34%), Postives = 81/107 (75.70%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAA 452
            ET  FQ+E+ QLL L+I++ YSNKEIFLRELISN+SDA  K+RF SL++    +   EL + +  DK   TL+I D+G+GMT+ +++++LGTIA+SGTK F+E+L +
Sbjct:    5 ETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRSLSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFLESLGS 111          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_SHEDO (Chaperone protein htpG OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.109e-25
Identity = 56/113 (49.56%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  123 SETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGAD 461
            S+ ET  FQ E+ QLL L+I++ YSNKEIFLREL+SN++DA  K+R+ +LTD +  +   EL + +  DK   T++I D+GIGMT+  ++ +LGTIA+SGTKEF   L+  A+
Sbjct:    2 SQQETHGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRYLALTDDALYEGDGELRVRVSTDKEKGTVTISDNGIGMTRDSVIEHLGTIAKSGTKEFFNNLSGEAN 114          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_ROSDO (Chaperone protein htpG OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.109e-25
Identity = 58/109 (53.21%), Postives = 77/109 (70.64%), Query Frame = 3
Query:  120 ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            AS  ETF+FQ E+ QLL ++  + YSN+EIFLREL+SN+SDA  K+R+E+LT+ S      E  I +  DK   TLS+ D+GIGM   DL++ LGTIARSGT  F++AL
Sbjct:    4 ASVKETFSFQTEVGQLLDIVAGSLYSNREIFLRELVSNASDACDKLRYEALTNPSLAQNADEFAISLAVDKKAKTLSVSDNGIGMNHGDLLDTLGTIARSGTGAFLDAL 112          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_PSESM (Chaperone protein htpG OS=Pseudomonas syringae pv. tomato GN=htpG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.109e-25
Identity = 57/113 (50.44%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +S+ ++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA+ K+RFE+L+    L+   EL I +  DK   T+++ D+GIGM++ D++ +LGTIA+SGT +FM+ L+
Sbjct:    1 MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSRPELLEGGAELKIRVSFDKDAKTVTLEDNGIGMSREDVITHLGTIAKSGTADFMKNLS 113          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_PSEF5 (Chaperone protein htpG OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.109e-25
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            +S+ ++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA+ K+RFE+L+    L+   EL I +  DK   T+++ D+GIGM++ D++ +LGTIA+SGT +FM+ L
Sbjct:    1 MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGGAELKIRVSFDKDAKTVTLEDNGIGMSREDVITHLGTIAKSGTADFMKNL 112          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_BURXL (Chaperone protein htpG OS=Burkholderia xenovorans (strain LB400) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.109e-25
Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  132 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            ET +FQAE+ QLL L+I++ YSNKEIFLRELISN+SDA  K+RFE++ + +  +  P L I +  DK   T++I D+GIGM++ + + NLGTIARSGTKEF   L+
Sbjct:    4 ETMSFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFEAIENSALYENDPNLRIRVSYDKDARTITIDDNGIGMSRDEAIANLGTIARSGTKEFFGKLS 109          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: ENPL_RABIT (Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.109e-25
Identity = 57/99 (57.58%), Postives = 73/99 (73.74%), Query Frame = 3
Query:  150 AEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEAL 446
            AE+N+++ LIIN+ Y NKEIFLRELISN+SDAL KIR  SLTD+  L    EL + I  DK  N L + D+G+GMT+ +LV NLGTIA+SGT EF+  +
Sbjct:    1 AEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEQALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 99          
BLAST of FC876383 vs. ExPASy Swiss-Prot
Match: HTPG_PSEFS (Chaperone protein htpG OS=Pseudomonas fluorescens (strain SBW25) GN=htpG PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.448e-25
Identity = 57/113 (50.44%), Postives = 84/113 (74.34%), Query Frame = 3
Query:  111 VSMASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALGKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALA 449
            +S+ ++ ET  FQ E+ QLL L+I++ YSNKEIFLRELISN+SDA+ K+RFE+L+    L+   EL I +  DK   T+++ D+GIGM++ D + +LGTIA+SGT +FM+ L+
Sbjct:    3 MSVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGGAELKIRVSFDKDAKTVTLEDNGIGMSREDAITHLGTIAKSGTADFMKNLS 115          
The following BLAST results are available for this feature:
BLAST of FC876383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
HTPG_PSEU28.491e-2650.44Chaperone protein htpG OS=Pseudomonas syringae pv.... [more]
HTPG_PSE148.491e-2650.44Chaperone protein htpG OS=Pseudomonas syringae pv.... [more]
HTPG_SHIDS1.109e-2552.34Chaperone protein htpG OS=Shigella dysenteriae ser... [more]
HTPG_SHEDO1.109e-2549.56Chaperone protein htpG OS=Shewanella denitrificans... [more]
HTPG_ROSDO1.109e-2553.21Chaperone protein htpG OS=Roseobacter denitrifican... [more]
HTPG_PSESM1.109e-2550.44Chaperone protein htpG OS=Pseudomonas syringae pv.... [more]
HTPG_PSEF51.109e-2550.89Chaperone protein htpG OS=Pseudomonas fluorescens ... [more]
HTPG_BURXL1.109e-2554.72Chaperone protein htpG OS=Burkholderia xenovorans ... [more]
ENPL_RABIT1.109e-2557.58Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN... [more]
HTPG_PSEFS1.448e-2550.44Chaperone protein htpG OS=Pseudomonas fluorescens ... [more]

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Properties
Property NameValue
Genbank descriptionC32004B04EF DevOvary1 Citrus clementina cDNA clone C32004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876383 ID=FC876383; Name=FC876383; organism=Citrus clementina; type=EST; length=467bp
GGAAACTAACTCTCTGCGTTTTTTCTCTCTCTCTCTCTCTGTCTCTCGTT
CGCTTCCAAACCCCTAGTTTATAATTCAGAAGAGATCGTTTTTTGGTTGA
ACGGCAGGTCGTTTCGATGGCATCAGAGACAGAGACGTTTGCCTTTCAGG
CTGAGATCAACCAGTTGTTGAGTTTGATCATCAACACCTTTTACAGCAAC
AAGGAGATCTTTCTTCGTGAGCTCATCAGCAACTCCTCCGATGCATTGGG
TAAGATCAGATTTGAAAGCTTGACAGACAAGAGCAAGCTAGATGCCCAAC
CAGAGCTTTTCATCCACATTATCCCTGATAAGACCAACAACACTTTGTCT
ATTATTGACAGTGGTATTGGCATGACTAAGGCTGATTTGGTGAACAACCT
TGGTACAATTGCTAGGTCTGGGACCAAAGAGTTCATGGAGGCATTGGCTG
CTGGGGCGGATGTGAGC
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