FC876390
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_METTH (Diaminopimelate decarboxylase OS=Methanobacterium thermoautotrophicum GN=lysA PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17 Identity = 62/203 (30.54%), Postives = 96/203 (47.29%), Query Frame = 3 Query: 75 PFYLYSKPQITRNVEAYKQALEGLNSI--IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKL----VGAHCHLGSTITKVDIFRDAAVLMVNYIDKI 665 P Y+ + +I N +A G S + YA KAN N ++ L + G G VS E+ AL AGFDP + ++ GN ++L A GV +NVDS L + S IA + + + R+NP V H + TG + SKFG+ +A + + + L VG H H+GS I + F A +++ ++ Sbjct: 30 PLYVIDEMRIRENYRRLYRAFSGEYSRFQVFYACKANTNLAVMRILEEEGSGIDAVSPGEIYTALMAGFDPDRILYTGNNVRDDELQFALDSGVRINVDSRSQLLRL---SEIAPEGLRISFRVNPLVGAGHHEHCITGGEMSKFGVMER------EAPEVYRMAMDLGFEPVGIHAHIGSGILDPEPFMLAVETLMDIAGRV 223
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_CORGL (Diaminopimelate decarboxylase OS=Corynebacterium glutamicum GN=lysA PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15 Identity = 66/226 (29.20%), Postives = 107/226 (47.35%), Query Frame = 3 Query: 3 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN--ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 671 ++ DG + V + D+ E P ++ + A G ++ YA KA I + + G + S NEL +AL AGF ++ +GN K +E L Q GV V +DS +LE + + GK +VL+R+ P ++ H ++AT +++ KFG F +A KA N L LVG HCH+GS + + F+ AA ++ +I + Sbjct: 21 RQEDGVVTVAGVPLPDLAEEYGT-PLFVVDEDDFRSRCRDMATAFGGPGNV-HYASKAFLTKTIARWVDEEGLALDIASINELGIALAAGFPASRITAHGNNKGVEFLRALVQNGVGHVVLDSAQELELLDYVAAGEGKIQDVLIRVKPGIEAHTHEFIATSHEDQKFGFSLASGSAF-EAAKAANNAENLNLVGLHCHVGSQVFDAEGFKLAAERVLGLYSQIHS 243
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_SYNY3 (Diaminopimelate decarboxylase OS=Synechocystis sp. (strain PCC 6803) GN=lysA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15 Identity = 56/208 (26.92%), Postives = 102/208 (49.04%), Query Frame = 3 Query: 75 PFYLYSKPQITRNVEAYKQALE----GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRA----GFDPT----KCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDK 662 P Y+ + + + + Y+Q+ + G + +I YA KA + ++ + G G +VSG EL + A G+D K F+GN K +++L A + VD+ +LE + + +G V ++LR+ P ++ H Y+ TG+ +SKFG +L+ + P+ L +G H H+GS I + +D ++V + K Sbjct: 58 PLYILDETTLRQAAQQYRQSFQAHYPGSSQVI-YASKAWSCLAVVAIAAQEGLGFDVVSGGELFTTVSALKQLGWDEAEIAEKIYFHGNNKSVQELQEAIAINCTIIVDNWLELETLTKLAADSGAPVKIMLRLTPGIECHTHEYIKTGHLDSKFGFDPNQLEAVFTYIAQQPS-LHCLGLHAHIGSQIFERQPHKDLGEVLVQWFTK 263
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_ACTPA (Diaminopimelate decarboxylase OS=Actinosynnema pretiosum subsp. auranticum GN=lysA PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14 Identity = 61/198 (30.81%), Postives = 97/198 (48.99%), Query Frame = 3 Query: 75 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR---NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYI 656 P + + + A+++AL + +A KA ++ + G + S EL +A GF + + +GN K EDL A GV V VDS ++E + +A +VL+R+ P VDP+ H VATG ++ KFG + L+ L V+ L+LVG HCH+GS + V ++ +AA +V I Sbjct: 51 PCQVLDEGTVRARARAFREALPEAEVV--FAGKALPCREVYRWVADEGLSLDVCSAGELAIARSVGFPAERVLLHGNVKTPEDLKAALGYGVGRVVVDSFDEIEQL---GALAEGPQDVLVRVTPGVDPRTHRAVATGVEDQKFGFSLAGGDALEAVLRVVE--QPSLRLVGLHCHVGSQVRHVAVYEEAARRVVGLI 241
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_MYCS2 (Diaminopimelate decarboxylase OS=Mycobacterium smegmatis GN=lysA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14 Identity = 54/180 (30.00%), Postives = 94/180 (52.22%), Query Frame = 3 Query: 141 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 671 G + YA KA +I + + G + +G EL +AL AGF ++ +GN K + +L A Q GV V +DSE ++E + + AG +VL+R+ V+ H +++T +++ KFG+ + ++A++ + L+LVG H H+GS I V F AA ++ + + A Sbjct: 87 GGGQYVHYAAKAFLCSEIARWVDEEGLSLDVATGGELAVALHAGFPASRITVHGNNKSVAELTAAVQAGVGHVVLDSEIEIERLDQIAGAAGVVQDVLVRVTVGVEAHTHEFISTAHEDQKFGL-SLATGAAMNAIRRVFATDNLRLVGLHSHIGSQIFDVAGFEIAAHRVIGLLRDVVA 265
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_DEIRA (Diaminopimelate decarboxylase OS=Deinococcus radiodurans GN=lysA PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14 Identity = 58/186 (31.18%), Postives = 90/186 (48.39%), Query Frame = 3 Query: 75 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDA 632 P YLY ++ + ++A ++ I YA+KAN N +L G G VS EL A AG + I NG K + AA+ G + VD E ++ + SR VL+R+NP + H ++ATG SKFG+ E++ L ++ +E ++G H H+GS I + + F A Sbjct: 18 PLYLYDAEELDAALWRVQRAFG--DARIFYAMKANPNLNLLRRYAAAGVGFECVSLGELLRAEAAGAGGERMILNGPAKSDAEYAAAARLGATIVVDREEEVVLLPPGSR-------VLVRVNPAMTVSTHEHLATGTARSKFGLTPEQVPGTLAELRDAGHE--VLGLHMHIGSAIEQAEDFTAA 192
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_MYCTU (Diaminopimelate decarboxylase OS=Mycobacterium tuberculosis GN=lysA PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13 Identity = 52/168 (30.95%), Postives = 88/168 (52.38%), Query Frame = 3 Query: 141 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAA 635 G + + YA KA ++ + + G + +G EL +AL A F P + +GN K + +L A + GV + VDS ++E + + AG +VL+R+ V+ H +++T +++ KFG+ + + AV+ + L+LVG H H+GS I VD F AA Sbjct: 62 GSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGL-SVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAA 228
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_MYCBO (Diaminopimelate decarboxylase OS=Mycobacterium bovis GN=lysA PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13 Identity = 52/168 (30.95%), Postives = 88/168 (52.38%), Query Frame = 3 Query: 141 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAA 635 G + + YA KA ++ + + G + +G EL +AL A F P + +GN K + +L A + GV + VDS ++E + + AG +VL+R+ V+ H +++T +++ KFG+ + + AV+ + L+LVG H H+GS I VD F AA Sbjct: 62 GSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGL-SVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAA 228
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_MYCLE (Diaminopimelate decarboxylase OS=Mycobacterium leprae GN=lysA PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12 Identity = 53/163 (32.52%), Postives = 85/163 (52.15%), Query Frame = 3 Query: 156 IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG--IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAA 635 + YA KA +I + + G + SG EL +AL A F P + +GN K + +L A + GV ++ +DS ++E + + AG +VL+R+ V+ H ++AT +++ KFG + + + V A N L+LVG H H+GS I V F AA Sbjct: 92 VHYAAKAFLCTEIARWIDEEGLSLDVCSGGELAVALHASFPPERISLHGNNKSVAELKDAVKAGVGYIVLDSTTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFIATAHEDQKFGLSVASGAAMAAVRRVFATDN-LRLVGLHSHIGSQIFDVAGFELAA 253
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_COREF (Diaminopimelate decarboxylase OS=Corynebacterium efficiens GN=lysA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11 Identity = 60/224 (26.79%), Postives = 100/224 (44.64%), Query Frame = 3 Query: 3 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN--ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKI 665 ++ DG + V + D+ E P ++ + A G + + YA KA + + + + G + S NEL +AL A F + +GN K L + + V +DS +LE + + GK VL+R+ P ++ H ++AT +++ KFG F DA +A N L+LVG HCH+GS + F AA ++ +I Sbjct: 35 RQEDGVVTVAGVPLPDLAEEYGT-PLFVVDEDDFRARCRDMASAFGGPDRV-HYASKAFLSKTVARWVDEEGLSLDIASENELGIALAADFPGERITAHGNNKDASFLRACVRNNLGHVVLDSAQELELLDYIAAGEGKVQPVLIRVKPGIEAHTHEFIATSHEDQKFGFSLASGAAF-DAARAAVNAENLELVGLHCHVGSQVFDAQGFSLAAERVLELYSRI 255 The following BLAST results are available for this feature:
BLAST of FC876390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 30
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876390 ID=FC876390; Name=FC876390; organism=Citrus clementina; type=EST; length=671bpback to top |