FC876390

Overview
NameFC876390
Unique NameFC876390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10345 contig Ccv1_Contig10345:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_METTH (Diaminopimelate decarboxylase OS=Methanobacterium thermoautotrophicum GN=lysA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17
Identity = 62/203 (30.54%), Postives = 96/203 (47.29%), Query Frame = 3
Query:   75 PFYLYSKPQITRNVEAYKQALEGLNSI--IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKL----VGAHCHLGSTITKVDIFRDAAVLMVNYIDKI 665
            P Y+  + +I  N     +A  G  S   + YA KAN N  ++  L + G G   VS  E+  AL AGFDP + ++ GN    ++L  A   GV +NVDS   L  +   S IA + + +  R+NP V    H +  TG + SKFG+         +A + +   + L    VG H H+GS I   + F  A   +++   ++
Sbjct:   30 PLYVIDEMRIRENYRRLYRAFSGEYSRFQVFYACKANTNLAVMRILEEEGSGIDAVSPGEIYTALMAGFDPDRILYTGNNVRDDELQFALDSGVRINVDSRSQLLRL---SEIAPEGLRISFRVNPLVGAGHHEHCITGGEMSKFGVMER------EAPEVYRMAMDLGFEPVGIHAHIGSGILDPEPFMLAVETLMDIAGRV 223          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_CORGL (Diaminopimelate decarboxylase OS=Corynebacterium glutamicum GN=lysA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 66/226 (29.20%), Postives = 107/226 (47.35%), Query Frame = 3
Query:    3 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN--ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 671
            ++ DG +    V + D+ E     P ++  +            A  G  ++  YA KA     I   + + G    + S NEL +AL AGF  ++   +GN K +E L    Q GV  V +DS  +LE +   +   GK  +VL+R+ P ++   H ++AT +++ KFG        F +A KA  N   L LVG HCH+GS +   + F+ AA  ++    +I +
Sbjct:   21 RQEDGVVTVAGVPLPDLAEEYGT-PLFVVDEDDFRSRCRDMATAFGGPGNV-HYASKAFLTKTIARWVDEEGLALDIASINELGIALAAGFPASRITAHGNNKGVEFLRALVQNGVGHVVLDSAQELELLDYVAAGEGKIQDVLIRVKPGIEAHTHEFIATSHEDQKFGFSLASGSAF-EAAKAANNAENLNLVGLHCHVGSQVFDAEGFKLAAERVLGLYSQIHS 243          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_SYNY3 (Diaminopimelate decarboxylase OS=Synechocystis sp. (strain PCC 6803) GN=lysA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 56/208 (26.92%), Postives = 102/208 (49.04%), Query Frame = 3
Query:   75 PFYLYSKPQITRNVEAYKQALE----GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRA----GFDPT----KCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDK 662
            P Y+  +  + +  + Y+Q+ +    G + +I YA KA +   ++    + G G  +VSG EL   + A    G+D      K  F+GN K +++L  A      + VD+  +LE +   +  +G  V ++LR+ P ++   H Y+ TG+ +SKFG    +L+     +   P+ L  +G H H+GS I +    +D   ++V +  K
Sbjct:   58 PLYILDETTLRQAAQQYRQSFQAHYPGSSQVI-YASKAWSCLAVVAIAAQEGLGFDVVSGGELFTTVSALKQLGWDEAEIAEKIYFHGNNKSVQELQEAIAINCTIIVDNWLELETLTKLAADSGAPVKIMLRLTPGIECHTHEYIKTGHLDSKFGFDPNQLEAVFTYIAQQPS-LHCLGLHAHIGSQIFERQPHKDLGEVLVQWFTK 263          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_ACTPA (Diaminopimelate decarboxylase OS=Actinosynnema pretiosum subsp. auranticum GN=lysA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 61/198 (30.81%), Postives = 97/198 (48.99%), Query Frame = 3
Query:   75 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIR---NEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYI 656
            P  +  +  +     A+++AL     +  +A KA    ++   +   G    + S  EL +A   GF   + + +GN K  EDL  A   GV  V VDS  ++E +     +A    +VL+R+ P VDP+ H  VATG ++ KFG      + L+  L  V+     L+LVG HCH+GS +  V ++ +AA  +V  I
Sbjct:   51 PCQVLDEGTVRARARAFREALPEAEVV--FAGKALPCREVYRWVADEGLSLDVCSAGELAIARSVGFPAERVLLHGNVKTPEDLKAALGYGVGRVVVDSFDEIEQL---GALAEGPQDVLVRVTPGVDPRTHRAVATGVEDQKFGFSLAGGDALEAVLRVVE--QPSLRLVGLHCHVGSQVRHVAVYEEAARRVVGLI 241          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_MYCS2 (Diaminopimelate decarboxylase OS=Mycobacterium smegmatis GN=lysA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 54/180 (30.00%), Postives = 94/180 (52.22%), Query Frame = 3
Query:  141 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKIRA 671
            G    + YA KA    +I   + + G    + +G EL +AL AGF  ++   +GN K + +L  A Q GV  V +DSE ++E +   +  AG   +VL+R+   V+   H +++T +++ KFG+ +      ++A++     + L+LVG H H+GS I  V  F  AA  ++  +  + A
Sbjct:   87 GGGQYVHYAAKAFLCSEIARWVDEEGLSLDVATGGELAVALHAGFPASRITVHGNNKSVAELTAAVQAGVGHVVLDSEIEIERLDQIAGAAGVVQDVLVRVTVGVEAHTHEFISTAHEDQKFGL-SLATGAAMNAIRRVFATDNLRLVGLHSHIGSQIFDVAGFEIAAHRVIGLLRDVVA 265          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_DEIRA (Diaminopimelate decarboxylase OS=Deinococcus radiodurans GN=lysA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 58/186 (31.18%), Postives = 90/186 (48.39%), Query Frame = 3
Query:   75 PFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGVFVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDA 632
            P YLY   ++   +   ++A    ++ I YA+KAN N  +L      G G   VS  EL  A  AG    + I NG  K   +   AA+ G  + VD E ++  +   SR       VL+R+NP +    H ++ATG   SKFG+  E++   L  ++   +E  ++G H H+GS I + + F  A
Sbjct:   18 PLYLYDAEELDAALWRVQRAFG--DARIFYAMKANPNLNLLRRYAAAGVGFECVSLGELLRAEAAGAGGERMILNGPAKSDAEYAAAARLGATIVVDREEEVVLLPPGSR-------VLVRVNPAMTVSTHEHLATGTARSKFGLTPEQVPGTLAELRDAGHE--VLGLHMHIGSAIEQAEDFTAA 192          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_MYCTU (Diaminopimelate decarboxylase OS=Mycobacterium tuberculosis GN=lysA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 52/168 (30.95%), Postives = 88/168 (52.38%), Query Frame = 3
Query:  141 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAA 635
            G  + + YA KA    ++   + + G    + +G EL +AL A F P +   +GN K + +L  A + GV  + VDS  ++E +   +  AG   +VL+R+   V+   H +++T +++ KFG+ +      + AV+     + L+LVG H H+GS I  VD F  AA
Sbjct:   62 GSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGL-SVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAA 228          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_MYCBO (Diaminopimelate decarboxylase OS=Mycobacterium bovis GN=lysA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 52/168 (30.95%), Postives = 88/168 (52.38%), Query Frame = 3
Query:  141 GLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKA--HPNELKLVGAHCHLGSTITKVDIFRDAA 635
            G  + + YA KA    ++   + + G    + +G EL +AL A F P +   +GN K + +L  A + GV  + VDS  ++E +   +  AG   +VL+R+   V+   H +++T +++ KFG+ +      + AV+     + L+LVG H H+GS I  VD F  AA
Sbjct:   62 GSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGL-SVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGFELAA 228          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_MYCLE (Diaminopimelate decarboxylase OS=Mycobacterium leprae GN=lysA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 53/163 (32.52%), Postives = 85/163 (52.15%), Query Frame = 3
Query:  156 IGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFG--IRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTITKVDIFRDAA 635
            + YA KA    +I   + + G    + SG EL +AL A F P +   +GN K + +L  A + GV ++ +DS  ++E +   +  AG   +VL+R+   V+   H ++AT +++ KFG  + +      +  V A  N L+LVG H H+GS I  V  F  AA
Sbjct:   92 VHYAAKAFLCTEIARWIDEEGLSLDVCSGGELAVALHASFPPERISLHGNNKSVAELKDAVKAGVGYIVLDSTTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFIATAHEDQKFGLSVASGAAMAAVRRVFATDN-LRLVGLHSHIGSQIFDVAGFELAA 253          
BLAST of FC876390 vs. ExPASy Swiss-Prot
Match: DCDA_COREF (Diaminopimelate decarboxylase OS=Corynebacterium efficiens GN=lysA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 60/224 (26.79%), Postives = 100/224 (44.64%), Query Frame = 3
Query:    3 KKADGFLYCEDVRVQDVMETVEKRPFYLYSKPQITRNVEAYKQALEGLNSIIGYAIKANNNYKILEHLRKLGCGAVLVSGNELRLALRAGFDPTKCIFNGNGKLLEDLVLAAQEGV-FVNVDSEFDLENIVVASRIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPN--ELKLVGAHCHLGSTITKVDIFRDAAVLMVNYIDKI 665
            ++ DG +    V + D+ E     P ++  +            A  G + +  YA KA  +  +   + + G    + S NEL +AL A F   +   +GN K    L    +  +  V +DS  +LE +   +   GK   VL+R+ P ++   H ++AT +++ KFG        F DA +A  N   L+LVG HCH+GS +     F  AA  ++    +I
Sbjct:   35 RQEDGVVTVAGVPLPDLAEEYGT-PLFVVDEDDFRARCRDMASAFGGPDRV-HYASKAFLSKTVARWVDEEGLSLDIASENELGIALAADFPGERITAHGNNKDASFLRACVRNNLGHVVLDSAQELELLDYIAAGEGKVQPVLIRVKPGIEAHTHEFIATSHEDQKFGFSLASGAAF-DAARAAVNAENLELVGLHCHVGSQVFDAQGFSLAAERVLELYSRI 255          
The following BLAST results are available for this feature:
BLAST of FC876390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
DCDA_METTH9.443e-1730.54Diaminopimelate decarboxylase OS=Methanobacterium ... [more]
DCDA_CORGL3.038e-1529.20Diaminopimelate decarboxylase OS=Corynebacterium g... [more]
DCDA_SYNY36.767e-1526.92Diaminopimelate decarboxylase OS=Synechocystis sp.... [more]
DCDA_ACTPA5.729e-1430.81Diaminopimelate decarboxylase OS=Actinosynnema pre... [more]
DCDA_MYCS27.482e-1430.00Diaminopimelate decarboxylase OS=Mycobacterium sme... [more]
DCDA_DEIRA7.482e-1431.18Diaminopimelate decarboxylase OS=Deinococcus radio... [more]
DCDA_MYCTU8.272e-1330.95Diaminopimelate decarboxylase OS=Mycobacterium tub... [more]
DCDA_MYCBO8.272e-1330.95Diaminopimelate decarboxylase OS=Mycobacterium bov... [more]
DCDA_MYCLE2.407e-1232.52Diaminopimelate decarboxylase OS=Mycobacterium lep... [more]
DCDA_COREF2.661e-1126.79Diaminopimelate decarboxylase OS=Corynebacterium e... [more]

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Properties
Property NameValue
Genbank descriptionC32004C01EF DevOvary1 Citrus clementina cDNA clone C32004C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876390 ID=FC876390; Name=FC876390; organism=Citrus clementina; type=EST; length=671bp
GCAAGAAAGCTGACGGCTTTCTCTACTGTGAAGATGTTAGAGTTCAGGAT
GTCATGGAGACAGTTGAAAAAAGACCTTTTTATTTGTACAGTAAGCCTCA
GATCACTAGAAATGTGGAGGCTTATAAACAAGCCCTTGAGGGGCTGAATT
CTATCATTGGTTATGCCATTAAGGCTAATAATAACTACAAGATTTTGGAA
CATTTGAGAAAATTGGGTTGTGGAGCTGTTCTTGTTAGTGGCAATGAGCT
GAGGCTTGCTCTTCGAGCTGGATTTGATCCCACCAAGTGTATCTTTAATG
GGAATGGGAAGCTTTTGGAGGATTTGGTGCTGGCTGCACAAGAGGGTGTG
TTTGTTAATGTTGATAGTGAGTTTGACTTGGAGAATATTGTTGTAGCTTC
AAGAATTGCTGGCAAGAAGGTTAATGTGTTGCTTCGGATTAATCCTGATG
TGGATCCTCAGGTCCATCCTTATGTTGCTACTGGGAACAAGAACTCTAAA
TTTGGCATTAGGAATGAGAAGTTGCAATGGTTTTTGGATGCCGTGAAGGC
ACATCCTAATGAGTTGAAGCTTGTGGGGGCTCATTGCCATCTTGGTTCCA
CCATTACCAAGGTGGACATATTCAGGGATGCTGCAGTTCTTATGGTCAAT
TACATTGACAAAATCCGCGCC
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