FC876398

Overview
NameFC876398
Unique NameFC876398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:13..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 54/212 (25.47%), Postives = 100/212 (47.17%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712
            PR GS+GF PRKRA+R   ++K +PK +  KP    AF  YK GMTH + ++       + +     VT++E           Y K    L+ +++++   L + V R+  K                Y  +E K+   ++ +     A  V+++  TQ  K+K   +K   + +I + G  + +K++YA     K + ++ VF++ + +D+
Sbjct:    9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKP---LAFAAYKVGMTHTILNI-------NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK-------------LKNYNFEEKKEQFLSKADN----ADEVKIIVSTQPWKIK--LKKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDV 191          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 55/211 (26.07%), Postives = 94/211 (44.55%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IET          Y +   G +++   WA  L  E++RR                       EG ++I   +E+ +   S +R + +T  + + G+ +K   +ME  ++   +  K +YA       + V  VF+   ++D
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRI-------------PIPAAGNQAEGLENIGKLIEEGR--VSDIRAVTYTLPKSLTGVPKKVPDIMESGISAKDLGAKFEYAKSILGNLVNVTDVFKNGTVVD 200          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 58/211 (27.49%), Postives = 92/211 (43.60%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709
            P+ GSL F PRKRA  H  + +A+P  + +   RL  F GYK GMTH++   +   S     E    VTIIET          Y +   G +++  VWA  L  E++RR                       E   +I   +E+ K   S +R + +T  + + G+ +K   +ME  ++   +  K +YA       + +  VF+   +ID
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRI-------------PVPKGDNMAETLGNIGKMIEEGK--VSDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYAKSILGTLVSITDVFKTGTLID 200          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 56/221 (25.34%), Postives = 93/221 (42.08%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKY-----ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712
            K   PR GSL + PRKR+  H  + +++P+ D     +L  F GYK GMTH++   +   S     E    VTIIET          Y K   G  ++   W   L +++ RR                            + A LEK++       A+ +R++ +T    + G+ +K   +ME  V+G  +  K +YA       + +  VF   +++D+
Sbjct:    3 KGHRPRRGSLAYSPRKRSQSHIPRFRSWPESDAEP--KLQGFAGYKVGMTHVIMIDDVKHSLTEGTEISVPVTIIETPAIRVAAIRAYGKDTYGEIAIAEAWTDVLDKDLSRRL--------------------KTAKNPDVNASLEKLETLVESGRANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYAKTVLGTMVEISDVFDNGKIVDV 201          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.863e-14
Identity = 51/191 (26.70%), Postives = 86/191 (45.03%), Query Frame = 2
Query:   74 HPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 646
            H R GS+ + PR RA R +G ++++P+ +     ++ AF GYK GMTHI     +  S    +     VT++E           Y +   GL  ++  WA+++ ++V RR  K                   +  KK I+       K    VR++ HT  + + G+  K   + EI++ G TI  ++ YA
Sbjct:    6 HSRRGSMAYYPRVRAKRIQGDIRSWPEIEGQ--TKVQAFAGYKVGMTHIQMVDYRKNSVTAGQVIMAPVTVVEVPPLTVMSIRYYARGDNGLEVISEEWAENIDKDVLRRINK------------------INRHKKGIEV------KDVDDVRLMVHTNPQLVSGVPSKTPEIFEIRIGGSTIENRIKYA 170          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 55/211 (26.07%), Postives = 94/211 (44.55%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMID 709
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IET          Y +   G +++  VWA  L  E++RR                       E  ++I   +E+ +   S VR + +T  + + G+ +K   +ME  ++   +  K +Y+       + V  VF+   ++D
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRRI-------------PIPAAGNQAEALENIGKLIEEGR--VSDVRAVIYTLPKSLTGVPKKVPDIMESGISARDLGTKFEYSKTILGTLVSVTDVFKNGTLVD 200          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_HALWD (50S ribosomal protein L3P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 54/213 (25.35%), Postives = 90/213 (42.25%), Query Frame = 2
Query:   77 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKA--IPVDAVFQKDEMID 709
            PR GS+GF PRKRA     +++++  +D +   +   F GYKAGMT ++   ++  S     E    VT++ET          Y  TP G + L  VW +     + R                    +E D       A+   I      VR++ HT    M+ + +K   +ME +V GGT+ ++V++            +  +F+  E +D
Sbjct:    7 PRKGSMGFSPRKRAESEVPRIRSWASNDGAPGVQ--GFAGYKAGMTQVLMVNDEANSPREGMEEAVPVTVVETPPMRAVALRAYEDTPYGSKPLTEVWGREFDTSLERTL-----------DLPNEDTFEDDAAALRDDAETGDIDD----VRLITHTLPAGMRNIPKKTPDVMETRVGGGTLTDRVEFGLDLISDGGEHEISDIFRAGEYLD 202          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 62/222 (27.93%), Postives = 101/222 (45.50%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA------QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712
            K   PR GSL F PRKRA     +++++PK+      R+  F GYKAGMTHI+   ++PG   + KE    VTIIET          Y +   GL +   V         ++S++ + R +  +              Y  D+ ++ +   LE + K   +V V A    +      +KK  +ME  + G ++ EK +Y      K + V  V ++ E++D+
Sbjct:    3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKE---TEVRMLGFAGYKAGMTHILMIDDEPG-LTNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKF-TFYQLLKRRIATLPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDV 218          
BLAST of FC876398 vs. ExPASy Swiss-Prot
Match: RL3_THESM (50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 60/218 (27.52%), Postives = 92/218 (42.20%), Query Frame = 2
Query:   65 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQ--HLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKAIPVDAVFQKDEMIDI 712
            +   PR GSL + PRKRA     +++ +P++   +  R+  F GYKAGMTH++   + PG     KE    VTI+E           Y +   GL +   V      L     +R                  +  T+E  +    +LE + K   VV + A    +      +KK  +ME  V G +I EK +Y      K I V  + Q+ E++DI
Sbjct:    3 RISRPRRGSLAYSPRKRAKSIVPRIRKWPQE---QEVRMLGFAGYKAGMTHVLMIDDAPG-LTKGKEIFVPVTIVEAPPLMVYGIRAYKRGYFGLETATEVIVPDFKLENYPSKRAKNVTFYKLLERRIKTLPKNYTEEVFQQKLGELEDLVKTGEVVELRALVATQPWLARIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDI 216          
The following BLAST results are available for this feature:
BLAST of FC876398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL3_NANEQ1.679e-1425.4750S ribosomal protein L3P OS=Nanoarchaeum equitans... [more]
RL3_METMA1.679e-1426.0750S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METBF1.679e-1427.4950S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_METBU2.192e-1425.3450S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_PICTO2.863e-1426.7050S ribosomal protein L3P OS=Picrophilus torridus ... [more]
RL3_METAC6.379e-1426.0750S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_HALWD8.331e-1425.3550S ribosomal protein L3P OS=Haloquadratum walsbyi... [more]
RL3_PYRAB2.424e-1327.9350S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]
RL3_THESM7.798e-1227.5250S ribosomal protein L3P OS=Thermococcus sibiricu... [more]

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Properties
Property NameValue
Genbank descriptionC32004C09EF DevOvary1 Citrus clementina cDNA clone C32004C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876398 ID=FC876398; Name=FC876398; organism=Citrus clementina; type=EST; length=714bp
GCCAGCTCTAGAGCACAACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGA
GAATGTCTCACAGGAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTT
CTTCCAAGGAAGCGAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCC
CAAGGATGACCCAAGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACA
AGGCTGGGATGACCCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAG
CTTCACAAGAAGGAGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCC
AATGATGGTGGTTGGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTC
GCTCTTTGAACACTGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGA
AGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATA
CTCAAAGCAGTATGAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGC
TGGAGAAGATCAAGAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACT
CAGATTAGGAAAATGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGA
AATCCAGGTCAATGGTGGCACCATTGCTGAAAAAGTTGACTATGCATATG
GCTTCTTTGAAAAAGCAATTCCTGTTGATGCTGTTTTCCAGAAAGATGAG
ATGATTGACATCAT
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