FC876403

Overview
NameFC876403
Unique NameFC876403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_PSEPW (Chaperone protein dnaK OS=Pseudomonas putida (strain W619) GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 87/168 (51.79%), Postives = 112/168 (66.67%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV + ++  V++I N +G RTTPS V +  D E L+G +AK Q   NP NT+F  KRLIGRRF +  VQ D+KL P+K++        +    +   K+ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GKIIGIDLGTTNSCVSILENGNVKVIENAEGARTTPSIVAYANDGEILVGQSAKRQAVTNPHNTLFAVKRLIGRRFEEDVVQKDIKLVPYKIVKANNGDAWV----EASGKEMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_CITK8 (Chaperone protein dnaK OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 87/168 (51.79%), Postives = 111/168 (66.07%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV +       ++ N +G+RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+ + P+K+I   AD     ++ KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGTTARVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIG--ADNGDAWLDVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_CHRVO (Chaperone protein dnaK OS=Chromobacterium violaceum GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 87/168 (51.79%), Postives = 110/168 (65.48%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V +    ++I N +GNRTTPS + +  D E L+G  AK Q   NP NT++ AKRLIGRRF D  VQ D+ L PF+++        + V     +++ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAVVEGGNPKVIENAEGNRTTPSIIAYVEDGEILVGAPAKRQAVTNPKNTIYAAKRLIGRRFEDKEVQKDIDLMPFEILKAKNGDAWVKVR----DQELAPPQISAEVLRKMKKAAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_BUCAT (Chaperone protein dnaK OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 85/168 (50.60%), Postives = 113/168 (67.26%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV +   ++  ++ N +G+RTTPS + +T + E L+G  AK Q   NP NT+F  KRLIGR+F D  VQ D+K+ P+ ++        I V    ++++ A  +IS+ VL KM++ AE YLG TIK AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGNKPRVLENAEGDRTTPSIIAYTQEGEVLVGQPAKRQAITNPKNTLFAIKRLIGRKFKDDEVQRDIKIMPYNIVNSDNGDAWIDV----KKQKMAPPQISAEVLKKMKKTAEDYLGETIKEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_BUCAI (Chaperone protein dnaK OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 85/168 (50.60%), Postives = 113/168 (67.26%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV +   ++  ++ N +G+RTTPS + +T + E L+G  AK Q   NP NT+F  KRLIGR+F D  VQ D+K+ P+ ++        I V    ++++ A  +IS+ VL KM++ AE YLG TIK AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGNKPRVLENAEGDRTTPSIIAYTQEGEVLVGQPAKRQAITNPKNTLFAIKRLIGRKFKDDEVQRDIKIMPYNIVNSDNGDAWIDV----KKQKMAPPQISAEVLKKMKKTAEDYLGETIKEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_BUCA5 (Chaperone protein dnaK OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 85/168 (50.60%), Postives = 113/168 (67.26%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV +   ++  ++ N +G+RTTPS + +T + E L+G  AK Q   NP NT+F  KRLIGR+F D  VQ D+K+ P+ ++        I V    ++++ A  +IS+ VL KM++ AE YLG TIK AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGNKPRVLENAEGDRTTPSIIAYTQEGEVLVGQPAKRQAITNPKNTLFAIKRLIGRKFKDDEVQRDIKIMPYNIVNSDNGDAWIDV----KKQKMAPPQISAEVLKKMKKTAEDYLGETIKEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_BLOPB (Chaperone protein dnaK OS=Blochmannia pennsylvanicus (strain BPEN) GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 85/168 (50.60%), Postives = 115/168 (68.45%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV + + ++  ++ N +G+RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+ + P+K+I+  AD     ++ KG++   A  ++S+ +L KM++ AE YLG  I  AV+TVPAYFND+QRQATKD+G IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAIIEGNKPRVLENSEGDRTTPSIIAYTQDGEILVGQPAKRQSVTNPKNTLFAIKRLIGRRFQDTEVQRDVNIMPYKIIS--ADNGDAWLDVKGQK--MAPPQVSAEILKKMKKTAEDYLGEQISEAVITVPAYFNDAQRQATKDSGRIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_AKKM8 (Chaperone protein dnaK OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=dnaK PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.532e-39
Identity = 86/165 (52.12%), Postives = 116/165 (70.30%), Query Frame = 1
Query:  127 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            +GIDLGTT SC+ V +  +  ++ N +G RTTPS V FT + ERL+G AAK Q   NP NTVF +KRLIGR++S+ + + D K+ P++++  P     I V+  GE+K F+ +EI+SMVL K++  AE+ LG TI  AV+TVPAYFND+QR ATK AG IAGL V
Sbjct:    5 LGIDLGTTNSCMAVMEGGQGTVLENSEGARTTPSIVAFTKSGERLVGQAAKRQAVTNPKNTVFSSKRLIGRKYSELTEE-DKKV-PYEIVEAPNGDAYIRVDVGGEKKTFSPQEIASMVLAKLKADAESKLGETITEAVITVPAYFNDAQRNATKAAGEIAGLKV 167          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_XANOR (Chaperone protein dnaK OS=Xanthomonas oryzae pv. oryzae GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.837e-39
Identity = 86/168 (51.19%), Postives = 112/168 (66.67%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV +    +  +I N +G+RTTPS V +T D E L+G +AK Q   NP NT +  KRLIGR+F+DA VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GKIIGIDLGTTNSCVSIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKFTDAEVQKDISHVPYGILAHDNGDAWVQTS---DAKRMAPQEISARVLEKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_XANOP (Chaperone protein dnaK OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.837e-39
Identity = 86/168 (51.19%), Postives = 112/168 (66.67%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV +    +  +I N +G+RTTPS V +T D E L+G +AK Q   NP NT +  KRLIGR+F+DA VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GKIIGIDLGTTNSCVSIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKFTDAEVQKDISHVPYGILAHDNGDAWVQTS---DAKRMAPQEISARVLEKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
The following BLAST results are available for this feature:
BLAST of FC876403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PSEPW7.532e-3951.79Chaperone protein dnaK OS=Pseudomonas putida (stra... [more]
DNAK_CITK87.532e-3951.79Chaperone protein dnaK OS=Citrobacter koseri (stra... [more]
DNAK_CHRVO7.532e-3951.79Chaperone protein dnaK OS=Chromobacterium violaceu... [more]
DNAK_BUCAT7.532e-3950.60Chaperone protein dnaK OS=Buchnera aphidicola subs... [more]
DNAK_BUCAI7.532e-3950.60Chaperone protein dnaK OS=Buchnera aphidicola subs... [more]
DNAK_BUCA57.532e-3950.60Chaperone protein dnaK OS=Buchnera aphidicola subs... [more]
DNAK_BLOPB7.532e-3950.60Chaperone protein dnaK OS=Blochmannia pennsylvanic... [more]
DNAK_AKKM87.532e-3952.12Chaperone protein dnaK OS=Akkermansia muciniphila ... [more]
DNAK_XANOR9.837e-3951.19Chaperone protein dnaK OS=Xanthomonas oryzae pv. o... [more]
DNAK_XANOP9.837e-3951.19Chaperone protein dnaK OS=Xanthomonas oryzae pv. o... [more]

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Properties
Property NameValue
Genbank descriptionC32004D02EF DevOvary1 Citrus clementina cDNA clone C32004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876403 ID=FC876403; Name=FC876403; organism=Citrus clementina; type=EST; length=620bp
ATCAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTTTTTCTTCGC
TGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAGTTTTGATAA
TGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTGGGGACGACG
TACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGATTATCGCCAA
TGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCACCGACACGG
AGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCACCATGAACCCCACG
AACACCGTCTTTGATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGC
ATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGATTGCTGGAC
CTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAG
TTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGAT
TGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGTTACTGTCC
CTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATGCCGGTGTC
ATTGCTGGGCTTAATGTGAT
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