FC876403

Overview
NameFC876403
Unique NameFC876403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_STRMK (Chaperone protein dnaK OS=Stenotrophomonas maltophilia (strain K279a) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.678e-38
Identity = 85/168 (50.60%), Postives = 112/168 (66.67%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV +    +  +I N +G+RTTPS V +T D E L+G +AK Q   NP NT +  KRLIGR+F+DA VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKFTDAEVQKDIAHVPYSILAHDNGDAWVATS---DGKKMAPQEISAKVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_RHOP5 (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisA53) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.678e-38
Identity = 84/168 (50.00%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V      ++I N +G RTTPS V F+D  ERL+G  AK Q   NP  T F  KRLIGRR+ D  V+ D KL P+K++        +    + +   ++  ++S+ +L KM+E AEA+LGA +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKVIGIDLGTTNSCVAVMDGKTPKVIENAEGMRTTPSIVAFSDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKKLVPYKIVKASNGDAWV----EADANTYSPSQVSAFILQKMKETAEAHLGAKVDQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_PROVI (Chaperone protein dnaK OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.678e-38
Identity = 85/168 (50.60%), Postives = 111/168 (66.07%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V Q  +  +I N +GNRTTPS V FT   +RL+G AAK Q   NPTNT+F  KR +GR+F +  V  + K+ P+ V+    +        K  +K ++ +EIS+M+L KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAVMQGTQPTVIENSEGNRTTPSMVAFTKNGDRLVGQAAKRQAITNPTNTIFSIKRFVGRKFDE--VPNEKKIAPYAVVNEGGE-----ARVKINDKTYSPQEISAMILQKMKQTAEDFLGEKVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 162          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_DESVV (Chaperone protein dnaK OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.678e-38
Identity = 87/167 (52.10%), Postives = 110/167 (65.87%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V +    + I N +G RTTPS V FTD ERL+GD AK Q   NP  TVF  KRL+GRR     V    +  P++++AG      + V    + + ++A EIS+M+L K++  AEAYLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:    2 GKIIGIDLGTTNSCVYVMEGKDPKCITNPEGGRTTPSVVAFTDKERLVGDIAKRQAVTNPERTVFAVKRLMGRRGDAPEVGRWKEHSPYRIVAGANGDAAVEV----QGRPYSAPEISAMILGKLKADAEAYLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLDV 164          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_DESVH (Chaperone protein dnaK OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dnaK PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.678e-38
Identity = 87/167 (52.10%), Postives = 110/167 (65.87%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V +    + I N +G RTTPS V FTD ERL+GD AK Q   NP  TVF  KRL+GRR     V    +  P++++AG      + V    + + ++A EIS+M+L K++  AEAYLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V
Sbjct:    2 GKIIGIDLGTTNSCVYVMEGKDPKCITNPEGGRTTPSVVAFTDKERLVGDIAKRQAVTNPERTVFAVKRLMGRRGDAPEVGRWKEHSPYRIVAGANGDAAVEV----QGRPYSAPEISAMILGKLKADAEAYLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLDV 164          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_THICR (Chaperone protein dnaK OS=Thiomicrospira crunogena (strain XCL-2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 86/168 (51.19%), Postives = 110/168 (65.48%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V +    ++I N +G RTTPS V + D  E L+GD+AK Q   NP NT+F  KRLIGRR  DA V+ D  +  +K+IA       + V     +K+ + +E+S+  L+KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAVMEGKETKVIPNAEGARTTPSIVAYADDGEVLVGDSAKRQAVTNPENTLFAIKRLIGRRADDAVVEKDKDMVSYKIIAADNGDAWVQVG----DKKLSPQEVSARTLMKMKKTAEDYLGHEVTEAVITVPAYFNDSQRQATKDAGKIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_PSEF5 (Chaperone protein dnaK OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 83/168 (49.40%), Postives = 114/168 (67.86%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV + ++  V++I N +G RTTPS + +  D E L+G +AK Q   NP NT++  KRLIGRRF +  VQ D+++ P+K++    +   + VN     ++ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GKIIGIDLGTTNSCVSILENGNVKVIENAEGARTTPSIIAYANDGEILVGQSAKRQAVTNPHNTLYAVKRLIGRRFDEEVVQKDIQMVPYKIVKADNNDAWVEVN----GQKMAPPQISAEILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_PSEA6 (Chaperone protein dnaK OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 90/168 (53.57%), Postives = 111/168 (66.07%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV V   ++ ++I N +G+RTTPS + ++ D E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+ + PF +I   AD     V  K E+   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:    2 GRIIGIDLGTTNSCVAVLDGEKAKVIENAEGDRTTPSIIAYSQDGETLVGQPAKRQAITNPKNTLFAIKRLIGRRFEDKEVQRDIDIMPFDIIK--ADNGDAWVQAKDEK--LAPPQISAEVLKKMKKTAEDYLGEEVTAAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_PHOLL (Chaperone protein dnaK OS=Photorhabdus luminescens subsp. laumondii GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 83/168 (49.40%), Postives = 109/168 (64.88%), Query Frame = 1
Query:  118 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            G  IGIDLGTT SCV +       ++ N +G+RTTPS + +T D E L+G  AK Q   NP NT+F  KRLIGRRF D   Q D+ + P+K+IA       + V    ++++ A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAIMDGTTARVLENSEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEAQRDVAIMPYKIIAADNGDAWLEV----KDQKMAPPQVSAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC876403 vs. ExPASy Swiss-Prot
Match: DNAK_METSB (Chaperone protein dnaK OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=dnaK PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.191e-38
Identity = 86/165 (52.12%), Postives = 107/165 (64.85%), Query Frame = 1
Query:  127 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDT-ERLIGDAAKNQVTMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 618
            IGIDLGTT SCV V +    ++I N +G RTTPS V FTD  ERL+G  AK Q   NP  T F  KRLIGR + D   + DM L P+K+I        +    + + KQ++  +IS+ +L KM+E AEAYLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    5 IGIDLGTTNSCVAVMEGTTPKVIENAEGARTTPSIVAFTDDGERLVGQPAKRQSVTNPERTFFAIKRLIGRTYDDPMTKKDMGLVPYKIIRASNGDAWV----EADGKQYSPSQISAFILQKMKETAEAYLGQPVSQAVITVPAYFNDAQRQATKDAGKIAGLEV 165          
The following BLAST results are available for this feature:
BLAST of FC876403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_STRMK1.678e-3850.60Chaperone protein dnaK OS=Stenotrophomonas maltoph... [more]
DNAK_RHOP51.678e-3850.00Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_PROVI1.678e-3850.60Chaperone protein dnaK OS=Prosthecochloris vibriof... [more]
DNAK_DESVV1.678e-3852.10Chaperone protein dnaK OS=Desulfovibrio vulgaris s... [more]
DNAK_DESVH1.678e-3852.10Chaperone protein dnaK OS=Desulfovibrio vulgaris (... [more]
DNAK_THICR2.191e-3851.19Chaperone protein dnaK OS=Thiomicrospira crunogena... [more]
DNAK_PSEF52.191e-3849.40Chaperone protein dnaK OS=Pseudomonas fluorescens ... [more]
DNAK_PSEA62.191e-3853.57Chaperone protein dnaK OS=Pseudoalteromonas atlant... [more]
DNAK_PHOLL2.191e-3849.40Chaperone protein dnaK OS=Photorhabdus luminescens... [more]
DNAK_METSB2.191e-3852.12Chaperone protein dnaK OS=Methylocella silvestris ... [more]

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Properties
Property NameValue
Genbank descriptionC32004D02EF DevOvary1 Citrus clementina cDNA clone C32004D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876403 ID=FC876403; Name=FC876403; organism=Citrus clementina; type=EST; length=620bp
ATCAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTTTTTCTTCGC
TGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAGTTTTGATAA
TGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTGGGGACGACG
TACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGATTATCGCCAA
TGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCACCGACACGG
AGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCACCATGAACCCCACG
AACACCGTCTTTGATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGC
ATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGATTGCTGGAC
CTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAG
TTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGAT
TGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGTTACTGTCC
CTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATGCCGGTGTC
ATTGCTGGGCTTAATGTGAT
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