FC876404

Overview
NameFC876404
Unique NameFC876404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10302 contig Ccv1_Contig10302:7..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: TCMO_PHAAU (Trans-cinnamate 4-monooxygenase OS=Phaseolus aureus GN=CYP73A2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.581e-12
Identity = 47/157 (29.94%), Postives = 71/157 (45.22%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVL---TRALASAGTEPVNLAQRLNLCVVNALGRVM 614
            PPGP P PI GN   +G  + H+++  LA+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YRH  + E A +    R    A    + + +RL L + N + R+M
Sbjct:   34 PPGPLPVPIFGNWLQVGDDLNHRNLTQLAKRFGDIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGEGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWEAEAAAVVDDVRKNPDAAVSGLVIRRRLQLMMYNNMYRIM 190          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: TCMO_SOYBN (Trans-cinnamate 4-monooxygenase OS=Glycine max GN=CYP73A11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.065e-12
Identity = 46/157 (29.30%), Postives = 70/157 (44.59%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRAL---ASAGTEPVNLAQRLNLCVVNALGRVM 614
            PPGP P PI GN   +G  + H+++  LA+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YRH  + E A +   +     A      + +RL L + N + R+M
Sbjct:   34 PPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRHGWESEAAAVVEDVKKNPDAAVSGTVIRRRLQLMMYNNMYRIM 190          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: TCMO_CATRO (Trans-cinnamate 4-monooxygenase OS=Catharanthus roseus GN=CYP73A4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 45/157 (28.66%), Postives = 73/157 (46.50%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRAL---ASAGTEPVNLAQRLNLCVVNALGRVM 614
            PPGP P P+ GN   +G  + H++++  A+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YR+  +EE A +   +     + T  + L +RL L + N + R+M
Sbjct:   34 PPGPIPVPVFGNWLQVGDDLNHRNLSDYAKKFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAARVVEDVKKNPESATNGIVLRRRLQLMMYNNMYRIM 190          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C82A2_SOYBN (Cytochrome P450 82A2 OS=Glycine max GN=CYP82A2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.009e-12
Identity = 47/160 (29.38%), Postives = 69/160 (43.12%), Query Frame = 3
Query:  174 WPIVGNLPHL--GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVLTRAL---------ASAGTEPVNLAQRLNLCVVNALGRVMLG 620
            WPI+G+LP L     PH+++  LA  +GP+  +++G              +    +D   S+ P    A  + YN   IV  PYGP WR LRKI      S   ++   HVR  E+      L           +G   V L Q  +L V N + R++ G
Sbjct:   44 WPIIGHLPLLLGSKTPHKTLGDLADKYGPIFSIKIGAKNAVVVSNWEMAKECYTTNDIAVSSLPDLISANLLCYNRSMIVVAPYGPYWRQLRKILMSEFLSPSRVEQLHHVRVSEVQSSITELFRDWRSNKNVQSGFATVELKQWFSLLVFNMILRMVCG 203          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C83B1_ARATH (Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CYP83B1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 45/146 (30.82%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGPM-PHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEE----MAVLTRALASAGTEPVNLAQRL 578
            PPGPK  PI+GNL  +    P   +  L++ +GP+  +++G              + LK  D NF+ RP   G + ++Y  +++ F  Y   +R +RK+  V+LFS   +  +R VR+EE    M  + +A   +GT  V+L++ L
Sbjct:   30 PPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQTMSYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFRPVREEECQRMMDKIYKAADQSGT--VDLSELL 173          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: TCMO_GLYEC (Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza echinata GN=CYP73A14 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 47/157 (29.94%), Postives = 70/157 (44.59%), Query Frame = 3
Query:  156 PPGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVL---TRALASAGTEPVNLAQRLNLCVVNALGRVM 614
            PPGP P PI GN   +G  + H+++  LA+  G +  LR+G              + L      F +R  N          QD+VF  YG  WR +R+I +V  F+ K +  YR   + E A +    R    A    + L +RL L + N + R+M
Sbjct:   34 PPGPIPVPIFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAASVVDDVRRNPDAAAGGIVLRRRLQLMMYNNMYRIM 190          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C81D1_ARATH (Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CYP81D1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 52/166 (31.33%), Postives = 82/166 (49.40%), Query Frame = 3
Query:  156 PPGPKPW-PIVGNLPHLGPMPHQSIAGLART-----HGPLMYLRLGFXXXXXXXXXXXXXQ--FLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEM-AVLTRALASAGTEP--VNLAQRLNLCVVNALGRVMLG 620
            PP P  W PI+G+L  L P  H+++   + T      G +M LRLG              +  F K +D   +NRP     KH+ YN  +++  PYG  WR LR++ ++ +FS   L+ + +VR +E+  +++R    AGT+   V L   L     N + R+M G
Sbjct:   34 PPSPPGWLPIIGHLRLLKPPIHRTLRSFSETLDHNDGGGVMSLRLGSRLVYVVSSHKVAAEECFGK-NDVVLANRPQVIIGKHVGYNNTNMIAAPYGDHWRNLRRLCTIEIFSTHRLNCFLYVRTDEVRRLISRLSRLAGTKKTVVELKPMLMDLTFNNIMRMMTG 198          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 41/125 (32.80%), Postives = 64/125 (51.20%), Query Frame = 3
Query:  159 PGPKPWPIVGNLPHLGP-MPHQSIAGLARTHGP--LMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEMAVL 524
            PGPK WPI+G+L  +   +PH+ +  LAR HG   LM   LG              + L     +F+NRP    A+ + +  + I F P G  WR+LR+I+S HLF+ + +  +   RQ ++  +
Sbjct:   80 PGPKGWPIIGSLMDMSVGLPHRKLESLARLHGAKQLMSFSLGCTPAVITSDPEVARELLT--SPHFANRPLKQSAQQLLFG-RAIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAM 201          
BLAST of FC876404 vs. ExPASy Swiss-Prot
Match: C82A4_SOYBN (Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.677e-11
Identity = 38/116 (32.76%), Postives = 55/116 (47.41%), Query Frame = 3
Query:  174 WPIVGNLPHL--GPMPHQSIAGLARTHGPLMYLRLGFXXXXXXXXXXXXXQFLKIHDSNFSNRPPNSGAKHIAYNYQDIVFRPYGPRWRMLRKISSVHLFSGKALDDYRHVRQEEM 515
            WPI G+LP L     PH+++  LA  HGPL  ++LG              +    +D   S RP    A+ + YN   ++  PYGP WR LRKI    + S   ++  + VR  E+
Sbjct:   47 WPIFGHLPLLIGSKSPHKALGALAEKHGPLFTIKLGAKKALVVSDWEMARECFTTNDVAVSARPKLLVAELMCYNNAMLLVAPYGPYWRELRKIIVTEILSSSRVEQLQDVRVSEV 162          
The following BLAST results are available for this feature:
BLAST of FC876404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
TCMO_PHAAU1.581e-1229.94Trans-cinnamate 4-monooxygenase OS=Phaseolus aureu... [more]
TCMO_SOYBN2.065e-1229.30Trans-cinnamate 4-monooxygenase OS=Glycine max GN=... [more]
TCMO_CATRO4.601e-1228.66Trans-cinnamate 4-monooxygenase OS=Catharanthus ro... [more]
C82A2_SOYBN6.009e-1229.38Cytochrome P450 82A2 OS=Glycine max GN=CYP82A2 PE=... [more]
C83B1_ARATH7.848e-1230.82Cytochrome P450 83B1 OS=Arabidopsis thaliana GN=CY... [more]
TCMO_GLYEC1.339e-1129.94Trans-cinnamate 4-monooxygenase OS=Glycyrrhiza ech... [more]
C81D1_ARATH3.895e-1131.33Cytochrome P450 81D1 OS=Arabidopsis thaliana GN=CY... [more]
C78A4_PINRA5.087e-1132.80Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
C82A4_SOYBN8.677e-1132.76Cytochrome P450 82A4 OS=Glycine max GN=CYP82A4 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004D03EF DevOvary1 Citrus clementina cDNA clone C32004D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876404 ID=FC876404; Name=FC876404; organism=Citrus clementina; type=EST; length=622bp
GACTCGTACCATTTCTACACTTTCTCTGGGAAACGAAACAAAGAGCAATG
TCTACTTTACCACTACTGATACTGTACACATCACTTTTGGCAATTGTCAT
TTCTTTCCTTTTTAGCCTCCTCCGGAACAGACGCAGACACTCCTCCCACC
GTCTGCCTCCCGGTCCGAAACCCTGGCCAATAGTCGGAAACCTCCCTCAC
TTGGGCCCTATGCCCCACCAATCCATAGCGGGTCTGGCCCGAACCCACGG
CCCCCTCATGTACCTCCGGTTAGGCTTCGTTGACGTCGTCGTGGCCGCTT
CCGCATCCGTGGCGGCCCAATTCCTGAAGATCCATGATTCCAACTTCTCC
AACCGCCCTCCCAACTCCGGCGCCAAGCACATCGCTTACAACTATCAGGA
CATCGTTTTCCGGCCGTACGGCCCCCGCTGGCGGATGCTGAGGAAGATCA
GCTCCGTTCATCTTTTCTCCGGCAAGGCCTTGGATGACTACAGGCACGTT
CGCCAGGAAGAGATGGCGGTGCTCACGCGCGCGTTGGCGAGTGCAGGAAC
GGAGCCGGTGAACTTAGCTCAACGGTTGAACTTGTGCGTTGTGAATGCCC
TAGGGCGGGTGATGCTAGGCTT
back to top