FC876406

Overview
NameFC876406
Unique NameFC876406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_URECA (Histone H2B OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 74/90 (82.22%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YN++ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+T S
Sbjct:   33 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNRRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTQS 122
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2BL3_STRPU (Late histone H2B.L3 OS=Strongylocentrotus purpuratus PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IYI+KVLKQVHPD GISS+AM IMNSF+ND+FE++A EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   33 ESYGIYIYKVLKQVHPDTGISSRAMSIMNSFVNDVFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 122
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B4_CAEEL (Probable histone H2B 4 OS=Caenorhabditis elegans GN=his-48 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A EASRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B3_CAEEL (Probable histone H2B 3 OS=Caenorhabditis elegans GN=his-41 PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A EASRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIASEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B1A_RAT (Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1h2ba PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   37 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B11_XENLA (Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IY++KVLKQVHPD GISSKAM IMNSF+ND+FE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_MARGL (Histone H2B, sperm OS=Marthasterias glacialis PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.932e-36
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IYI+KV+KQVHPD GISS+AM IMNSF+NDIFE++A EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   31 ESYGIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 120
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B_ASTRU (Histone H2B, gonadal OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.932e-36
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IYI+KV+KQVHPD GISS+AM IMNSF+NDIFE++A EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   32 ESYGIYIYKVMKQVHPDTGISSRAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 121
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B2_CAEEL (Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 7.932e-36
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A EASRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B1_CAEEL (Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 PE=1 SV=4)

HSP 1 Score: 150.599 bits (379), Expect = 7.932e-36
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +YI++VLKQVHPD G+SSKAM IMNSF+ND+FE++A EASRLA YNK+ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   32 ESYSVYIYRVLKQVHPDTGVSSKAMSIMNSFVNDVFERIAAEASRLAHYNKRSTISSREIQTAVRLILPGELAKHAVSEGTKAVTKYTSS 121
The following BLAST results are available for this feature:
BLAST of FC876406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_URECA6.074e-3682.22Histone H2B OS=Urechis caupo PE=3 SV=2[more]
H2BL3_STRPU6.074e-3681.11Late histone H2B.L3 OS=Strongylocentrotus purpurat... [more]
H2B4_CAEEL6.074e-3678.89Probable histone H2B 4 OS=Caenorhabditis elegans G... [more]
H2B3_CAEEL6.074e-3678.89Probable histone H2B 3 OS=Caenorhabditis elegans G... [more]
H2B1A_RAT6.074e-3683.33Histone H2B type 1-A OS=Rattus norvegicus GN=Hist1... [more]
H2B11_XENLA6.074e-3681.11Histone H2B 1.1 OS=Xenopus laevis PE=1 SV=2[more]
H2B_MARGL7.932e-3681.11Histone H2B, sperm OS=Marthasterias glacialis PE=1... [more]
H2B_ASTRU7.932e-3681.11Histone H2B, gonadal OS=Asterias rubens PE=1 SV=2[more]
H2B2_CAEEL7.932e-3678.89Histone H2B 2 OS=Caenorhabditis elegans GN=his-4 P... [more]
H2B1_CAEEL7.932e-3678.89Histone H2B 1 OS=Caenorhabditis elegans GN=his-11 ... [more]

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Properties
Property NameValue
Genbank descriptionC32004D05EF DevOvary1 Citrus clementina cDNA clone C32004D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876406 ID=FC876406; Name=FC876406; organism=Citrus clementina; type=EST; length=724bp
GGAAACGCCTAGCTTTACTCTTACCGTTTCGAAGTAAAAGGAAAAGAAAA
TATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGC
ACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGA
AGACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGC
AAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGC
GAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGC
AGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAAC
AGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCT
TGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAG
GGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGC
ATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAG
GCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAATC
TTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCTGA
TCCAGGTGATGTGCATGTTCATTA
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