FC876406

Overview
NameFC876406
Unique NameFC876406
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876406_ssr70 microsatellite FC876406_ssr70:70..79. BLAST: Citrus ESTs to Prunus persica proteins V1
FC876406_ssr234 microsatellite FC876406_ssr234:234..245. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10350 contig Ccv1_Contig10350:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B3A_MOUSE (Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B1P_MOUSE (Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B1L_HUMAN (Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B1F_MOUSE (Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h2bf PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B1B_MOUSE (Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B8_CHICK (Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.221e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B5_CHICK (Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.221e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B2E_PONAB (Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.221e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B2E_HUMAN (Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 3.221e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of FC876406 vs. ExPASy Swiss-Prot
Match: H2B1_CHICK (Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.221e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  264 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 533
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of FC876406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B3A_MOUSE2.466e-3783.33Histone H2B type 3-A OS=Mus musculus GN=Hist3h2ba ... [more]
H2B1P_MOUSE2.466e-3783.33Histone H2B type 1-P OS=Mus musculus GN=Hist1h2bp ... [more]
H2B1L_HUMAN2.466e-3783.33Histone H2B type 1-L OS=Homo sapiens GN=HIST1H2BL ... [more]
H2B1F_MOUSE2.466e-3783.33Histone H2B type 1-F/J/L OS=Mus musculus GN=Hist1h... [more]
H2B1B_MOUSE2.466e-3783.33Histone H2B type 1-B OS=Mus musculus GN=Hist1h2bb ... [more]
H2B8_CHICK3.221e-3784.44Histone H2B 8 OS=Gallus gallus GN=H2B-VIII PE=1 SV... [more]
H2B5_CHICK3.221e-3784.44Histone H2B 5 OS=Gallus gallus GN=H2B-V PE=1 SV=2[more]
H2B2E_PONAB3.221e-3784.44Histone H2B type 2-E OS=Pongo abelii GN=HIST2H2BE ... [more]
H2B2E_HUMAN3.221e-3784.44Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE ... [more]
H2B1_CHICK3.221e-3784.44Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE... [more]

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Properties
Property NameValue
Genbank descriptionC32004D05EF DevOvary1 Citrus clementina cDNA clone C32004D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876406 ID=FC876406; Name=FC876406; organism=Citrus clementina; type=EST; length=724bp
GGAAACGCCTAGCTTTACTCTTACCGTTTCGAAGTAAAAGGAAAAGAAAA
TATCTACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGC
ACCAAAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGA
AGACATCGGTGGCCGAGAAGGCGCCGGCAGAGAAGAAGCCGAAGGCCGGC
AAGAAGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGC
GAAGAAGAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGC
AGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAAC
AGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCT
TGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCG
CTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAG
GGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGC
ATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAG
GCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAATC
TTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCTGA
TCCAGGTGATGTGCATGTTCATTA
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