FC876409

Overview
NameFC876409
Unique NameFC876409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13923 contig Ccv1_Contig13923:55..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_STAAN (Pyruvate kinase OS=Staphylococcus aureus (strain N315) GN=pyk PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 40/121 (33.06%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFI 564
            TKIV T+GP S S ++I   + AGM+VAR +FS G+ E H+  ++ ++   K   K+ A++LDT GPE++  N  +  I L+    V+++ +   E T +   + ++ L   V+ G  I +
Sbjct:    4 TKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILL 123          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_STAAM (Pyruvate kinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pyk PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 40/121 (33.06%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFI 564
            TKIV T+GP S S ++I   + AGM+VAR +FS G+ E H+  ++ ++   K   K+ A++LDT GPE++  N  +  I L+    V+++ +   E T +   + ++ L   V+ G  I +
Sbjct:    4 TKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILL 123          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_STAAC (Pyruvate kinase OS=Staphylococcus aureus (strain COL) GN=pyk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 40/121 (33.06%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFI 564
            TKIV T+GP S S ++I   + AGM+VAR +FS G+ E H+  ++ ++   K   K+ A++LDT GPE++  N  +  I L+    V+++ +   E T +   + ++ L   V+ G  I +
Sbjct:    4 TKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILL 123          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_STAAB (Pyruvate kinase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=pyk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 40/121 (33.06%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFI 564
            TKIV T+GP S S ++I   + AGM+VAR +FS G+ E H+  ++ ++   K   K+ A++LDT GPE++  N  +  I L+    V+++ +   E T +   + ++ L   V+ G  I +
Sbjct:    4 TKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILL 123          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_STAA8 (Pyruvate kinase OS=Staphylococcus aureus (strain NCTC 8325) GN=pyk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 40/121 (33.06%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFI 564
            TKIV T+GP S S ++I   + AGM+VAR +FS G+ E H+  ++ ++   K   K+ A++LDT GPE++  N  +  I L+    V+++ +   E T +   + ++ L   V+ G  I +
Sbjct:    4 TKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILL 123          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_STAA3 (Pyruvate kinase OS=Staphylococcus aureus (strain USA300) GN=pyk PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 40/121 (33.06%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFI 564
            TKIV T+GP S S ++I   + AGM+VAR +FS G+ E H+  ++ ++   K   K+ A++LDT GPE++  N  +  I L+    V+++ +   E T +   + ++ L   V+ G  I +
Sbjct:    4 TKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMN-EVEGTPEKFSVTYENLINDVQVGSYILL 123          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_STAS1 (Pyruvate kinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=pyk PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEV-KGN-DVTCVIKNT 660
            TKIV T+GP S S +++   +KAGM+VAR +FS G+   H+  ++ ++   K   K  A++LDT GPE++  N  +  I L+  GS V       E T +   + ++ L   V++G  I +   L        + L+V  + K N +V C + NT
Sbjct:    4 TKIVCTIGPASESEEMLEKLIKAGMNVARLNFSHGDQAEHKARIDTIRKVSKRLGKTVAILLDTKGPEIRTHNMKDGLIELE-KGSEVTVSMTEVEGTPEKFSVTYENLINDVEEGSYILLDDGL--------IELQVKSIDKANGEVLCDVLNT 149          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYM_FELCA (Pyruvate kinase isozyme M1 OS=Felis catus GN=PKM2 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 44/138 (31.88%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT------TKKLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFT 582
            T I+ T+GP SRSV+++   +K+GM+VAR +FS G  EYH ET++N++AA ++        +  AV LDT GPE++   +       + LK   ++ +T D    ++    VL +++  + K V+ G  +++   L +
Sbjct:   45 TGIICTIGPASRSVEILKEMIKSGMNVARLNFSHGTHEYHAETIKNVRAATESFASDPIRYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENVLWLDYKNICKVVEVGSKVYVDDGLIS 182          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYK_LEIME (Pyruvate kinase OS=Leishmania mexicana GN=PYK PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  205 KIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVN--KSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFI 564
            +I+ T+GP ++SV+ + G +++GMSVAR +FS G+ EYHQ T+ N++ A        A+ LDT GPE++       +  +   A   V   P    + T     I++  L+K V+ G+ I+I
Sbjct:   23 RIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYI 144          
BLAST of FC876409 vs. ExPASy Swiss-Prot
Match: KPYM_RAT (Pyruvate kinase isozymes M1/M2 OS=Rattus norvegicus GN=Pkm2 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 44/138 (31.88%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  202 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT------TKKLCAVMLDTVGPELQ---VVNKSEKAISLKADGSVVLTPDCG--QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFT 582
            T I+ T+GP SRSV+++   +K+GM+VAR +FS G  EYH ET++N++AA ++        +  AV LDT GPE++   +       + LK   ++ +T D    ++    +L +++  + K V+ G  I++   L +
Sbjct:   45 TGIICTIGPASRSVEMLKEMIKSGMNVARLNFSHGTHEYHAETIKNVRAATESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIYVDDGLIS 182          
The following BLAST results are available for this feature:
BLAST of FC876409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
KPYK_STAAN1.057e-1333.06Pyruvate kinase OS=Staphylococcus aureus (strain N... [more]
KPYK_STAAM1.057e-1333.06Pyruvate kinase OS=Staphylococcus aureus (strain M... [more]
KPYK_STAAC1.057e-1333.06Pyruvate kinase OS=Staphylococcus aureus (strain C... [more]
KPYK_STAAB1.057e-1333.06Pyruvate kinase OS=Staphylococcus aureus (strain b... [more]
KPYK_STAA81.057e-1333.06Pyruvate kinase OS=Staphylococcus aureus (strain N... [more]
KPYK_STAA31.057e-1333.06Pyruvate kinase OS=Staphylococcus aureus (strain U... [more]
KPYK_STAS11.381e-1332.26Pyruvate kinase OS=Staphylococcus saprophyticus su... [more]
KPYM_FELCA2.355e-1331.88Pyruvate kinase isozyme M1 OS=Felis catus GN=PKM2 ... [more]
KPYK_LEIME3.076e-1333.61Pyruvate kinase OS=Leishmania mexicana GN=PYK PE=1... [more]
KPYM_RAT4.017e-1331.88Pyruvate kinase isozymes M1/M2 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionC32004D10EF DevOvary1 Citrus clementina cDNA clone C32004D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876409 ID=FC876409; Name=FC876409; organism=Citrus clementina; type=EST; length=696bp
GATCGTAAGTATTAATCAACGAATAAACACTAAAAATCAAAACACTCTAA
TCAACGCTAACCGCTGCCTCTTTCATCTCTCGTACTCTCTCTGTATCTCT
CTGTTCAGTGAAAGATGCATTCAAGTCACTTGCTTCTCGAGGAGCCAATC
AGGATGGCTTCAATCCTGGAGCCATCCAAAGCCAGTTTCTTCCCGGCAAT
GACCAAAATTGTTGGAACGCTTGGTCCTAAATCTCGATCTGTTGATGTTA
TATCCGGTTGCCTCAAAGCTGGAATGTCTGTGGCTAGATTCGATTTCTCG
TGGGGTAATACTGAATACCACCAAGAGACCTTGGAGAATCTCAAGGCGGC
AGTTAAGACTACTAAGAAGCTTTGTGCTGTTATGTTGGACACAGTGGGTC
CCGAATTGCAGGTTGTTAATAAGAGTGAGAAGGCAATTTCACTTAAGGCA
GATGGTTCTGTTGTTCTCACACCTGACTGTGGACAAGAAGCCACTTCTCA
AGTTTTGCCCATCAATTTCGATGGACTTGCTAAGTCAGTGAAGAAAGGAG
ACACCATTTTTATCGGTCAATACTTGTTCACTGGAAGTGAGACTACTTCT
GTGTGGCTGGAGGTTTCTGAAGTGAAAGGAAATGATGTAACTTGTGTGAT
AAAGAATACTGCACATTGGCTGGTTCACTTTTCACTTTACATGCTC
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