FC876410

Overview
NameFC876410
Unique NameFC876410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPC_RHIFE (Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.801e-15
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  406 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFF 636
            +MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  +               TY  NG + ++QYG+G+++GFF
Sbjct:   68 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-TQACTGHTRFNPSQSSTYSTNGQTFSLQYGSGSLTGFF 143          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.801e-15
Identity = 54/148 (36.49%), Postives = 79/148 (53.38%), Query Frame = 1
Query:  199 FLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKE--EETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFF 636
            +++++     L    L+R+ LRK K  +   +  Q V K+  +     P ++Y+  G+ GD    +     +MDA YFGE+SIGTP Q F V+FDTGSSNLWV S  C  S               TY   G + ++QYGTG+++GFF
Sbjct:    3 WMVVALLCLPLLEASLLRVPLRKMKSIR-ETMKEQGVLKDFLKTHKYDPGQKYHF-GNFGDYSV-LYEPMAYMDASYFGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQ-SEACTTHARFNPSKSSTYYTEGQTFSLQYGTGSLTGFF 146          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.239e-15
Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  244 LVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVA---LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            +V+I L KKK  + N +      K +E MRT   +YNL          +V+   L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S               TY     + +I YGTG+++G
Sbjct:    3 VVKIPLVKKKSLRQNLIEN---GKLKEFMRT--HKYNLGSKYIREAATLVSEQPLQNYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSIYC-SSEACTNHNRFNPQDSSTYEATSETLSITYGTGSMTG 128          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CARP_YEAST (Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.239e-15
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  391 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFFS 639
            V L N+++AQY+ ++++GTP Q F VI DTGSSNLWVPS +C  S+              +Y  NGT  AIQYGTG++ G+ S
Sbjct:   81 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNEC-GSLACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGYIS 162          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPC_MOUSE (Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.149e-15
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  199 FLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKE--EETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGFF 636
            +++++     L    L+R+ L+K K  +   +  Q V K+  +     P ++Y+  G  GD    +     +MDA Y+GE+SIGTP Q F V+FDTGSSNLWV S  C  S               TY   G + ++QYGTG+++GFF
Sbjct:    3 WMVVALLCLPLLEAALIRVPLKKMKSIR-ETMKEQGVLKDFLKNHKYDPGQKYHF-GKFGDYSV-LYEPMAYMDASYYGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQ-SEACTTHTRYNPSKSSTYYTQGQTFSLQYGTGSLTGFF 146          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.149e-15
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N++D +YFG + IGTP+Q FTV+FDTGSSNLWVPS  CY S+              TY     + +I YGTG+++G
Sbjct:   68 LENYLDVEYFGTIGIGTPAQNFTVVFDTGSSNLWVPSVYCY-SLACMDHNLFNPQDSSTYRATSKTVSITYGTGSMTG 144          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.149e-15
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N++D +YFG +SIG+P Q FTVIFDTGSSNLWVPS  C  S               TY + G S +IQYGTG++SG
Sbjct:   70 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYC-TSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGSLSG 146          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CHYM_CALJA (Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.064e-14
Identity = 56/142 (39.44%), Postives = 75/142 (52.82%), Query Frame = 1
Query:  217 AAFALPN-DGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVA---LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            A FAL    G+VRI L K K   + R +     KE   +   ++ +    S   S++  VA   L N++D QYFG++ IGTP Q FTV+FDTGSS+LWVPS  C  SV              T+     S +IQYGTG++ G
Sbjct:    9 AVFALSQASGIVRIPLHKGK--SLRRAL-----KERGLLEDFLKNHQHAVSRKHSNSREVASEFLTNYLDCQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSVYCN-SVACQNHHRFDPSKSSTFQNMDKSLSIQYGTGSMQG 142          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.815e-14
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N++D +YFG VSIG+PSQ FTVIFDTGSSNLWVPS  C  S               TY   G   +IQYGTG+++G
Sbjct:   72 LINYLDMEYFGTVSIGSPSQNFTVIFDTGSSNLWVPSVYC-TSPACKAHPVFHPSQSSTYMEVGNHFSIQYGTGSLTG 148          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA4_RABIT (Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.371e-14
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  394 ALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            +L N++DA+YFG +SIGTP Q FTVIFDTGSSNLWVPS  C  S+              TY     + +I YGTG+++G
Sbjct:   66 SLENYLDAEYFGTISIGTPPQDFTVIFDTGSSNLWVPSTYC-SSLACALHKRFNPEDSSTYQGTSETLSITYGTGSMTG 143          
The following BLAST results are available for this feature:
BLAST of FC876410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PEPC_RHIFE2.801e-1550.65Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=... [more]
PEPC_RAT2.801e-1536.49Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1[more]
PEPA_BOVIN6.239e-1540.15Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2[more]
CARP_YEAST6.239e-1546.99Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4... [more]
PEPC_MOUSE8.149e-1535.14Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1[more]
PEPA4_MACFU8.149e-1547.44Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
CATE_HUMAN8.149e-1552.56Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
CHYM_CALJA1.064e-1439.44Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1[more]
CATE_RAT1.815e-1452.56Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]
PEPA4_RABIT2.371e-1449.37Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32004D11EF DevOvary1 Citrus clementina cDNA clone C32004D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876410 ID=FC876410; Name=FC876410; organism=Citrus clementina; type=EST; length=639bp
GAAAACAATTCAAACTCGAATTAACGGCCAAAGCACATACTCCAGAAACG
CATTTTATTCGCTTTTCTTTCTTTATTCTGACCCTCGATTTCTCGGTCTC
GTCAGTCCACTTCTTTACTCTGTCTGTGCTCTTTTGAAAGATACTCAGTT
GTCGACATGGGAACCAAATTCACAGCCATTCGGGTTGCACTTTTTCTTTT
TCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCCAAATGATGGATTGGTAA
GAATTGGGCTGAGAAAGAAGAAATTGGATCAGATCAATCGCCTTGTTGGA
CAGACTGTATCTAAGGAAGAGGAAACGATGAGAACACCTGTCAGAAGATA
TAATCTCCATGGTAGTCTTGGAGATTCTGATACTGATATTGTTGCATTAA
ATAACTTTATGGATGCTCAGTATTTTGGGGAGGTTAGTATTGGCACACCT
TCCCAGACCTTCACTGTGATATTTGACACAGGAAGTTCTAATCTTTGGGT
GCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTGCTATTTCCACTCCAAGT
ATAAGTCCAGCCATTCAAGTACCTACNAAAGGAATGGGACATCTGCCGCA
ATCCAATATGGGACTGGAGCAATTTCTGGTTTCTTTAGC
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