FC876410

Overview
NameFC876410
Unique NameFC876410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA_CALJA (Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13
Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S               TY     + +I YGTG+++G
Sbjct:   67 LVNYLDMEYFGTIGIGTPAQEFTVIFDTGSSNLWVPSIYC-SSPACTNHNRFNPQESSTYQATSQTLSIAYGTGSMTG 143          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = 1
Query:  196 LFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            +FL+L+  A A     + RI L K+   +     G        +++  ++   + G + + D     L+++ +AQY+G V+IGTP Q F V+FDTGSSNLWVP A C F  +              +    G S  IQYGTG++ G
Sbjct:    5 VFLLLALVALA---SAIQRIKLEKRTYTREQYKFG--------SIQEHLKAKYVPGYIPNKDAFNEGLSDYSNAQYYGPVTIGTPPQNFQVLFDTGSSNLWVPCANCPFGDIACRMHNRFDCKKSSSCTATGASFEIQYGTGSMKG 139          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.301e-12
Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N++D +YFG +SIG+P Q FTVIFDT SSNLWVPS  C  S               TY   GT  +I YGTG+++G
Sbjct:   70 LINYLDMEYFGTISIGSPPQNFTVIFDTVSSNLWVPSVYC-TSPACQMHPQFRPSQSNTYSEVGTPFSIAYGTGSLTG 146          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPA_SUNMU (Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.699e-12
Identity = 37/78 (47.44%), Postives = 46/78 (58.97%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            L N+MD +YFG + IGTP Q FTVIFDTGSSNLWVPS  C  S               T+     + +I YGTG+++G
Sbjct:   67 LVNYMDMEYFGTIGIGTPPQEFTVIFDTGSSNLWVPSVYC-SSPACSNHNRFNPQKSSTFQSTSQTLSIAYGTGSMTG 143          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CHYM_SHEEP (Chymosin OS=Ovis aries GN=CYM PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.785e-12
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  370 GDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            G  +   V L N++D+QYFG++ +GTP Q FTV+FDTGSS+ WVPS  C  S               T+   G   +I+YGTG++ G
Sbjct:   57 GFGEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSSTFQNLGKPLSIRYGTGSMQG 142          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CHYM_BOVIN (Chymosin OS=Bos taurus GN=CYM PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.944e-12
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  370 GDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISG 630
            G  +   V L N++D+QYFG++ +GTP Q FTV+FDTGSS+ WVPS  C  S               T+   G   +I YGTG++ G
Sbjct:   57 GFGEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQG 142          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PEPC_MONDO (Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.433e-12
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAIS 627
            + N++D+ YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S               T+   G +  + YG+G+++
Sbjct:   67 ITNYLDSFYFGEISIGTPPQNFLVLFDTGSSNLWVPSTYCQ-SQACSNHNRFSPSQSSTFTNGGQTYTLSYGSGSLT 142          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PAG2_PIG (Pregnancy-associated glycoprotein 2 OS=Sus scrofa GN=PAG2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.101e-11
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  397 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGF 633
            L N++D  Y G +SIGTP Q F+V+FDTGSS+LWVPS  C  S               T+   G S  ++YG+G +SGF
Sbjct:   68 LRNYLDMVYVGNISIGTPPQQFSVVFDTGSSDLWVPSIYCK-SKACVTHRSFNPSHSSTFHDRGKSIKLEYGSGKMSGF 145          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.101e-11
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  373 DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCY 519
            DS + +VAL N  D  YFGE+ IGTP Q FTVIFDTGSS LWVPS+K +
Sbjct:    1 DSGSTVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSYLWVPSSKAH 49          
BLAST of FC876410 vs. ExPASy Swiss-Prot
Match: PAG2_BOVIN (Pregnancy-associated glycoprotein 2 OS=Bos taurus GN=PAG2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.879e-11
Identity = 42/117 (35.90%), Postives = 56/117 (47.86%), Query Frame = 1
Query:  313 KEEETMRTPVRRYNLHG----------SLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXTYXRNGTSAAIQYGTGAISGF 633
            K+ +T+R  +R  NL            S  DS   I  L N++D  Y G ++IGTP Q F V+FDTGS+NLWVP   C  S               ++   G+   I YG+G I GF
Sbjct:   22 KKMKTLRETLREKNLLNNFLEEQAYRLSKNDSKITIHPLRNYLDTAYVGNITIGTPPQEFRVVFDTGSANLWVPCITC-TSPACYTHKTFNPQNSSSFREVGSPITIFYGSGIIQGF 137          
The following BLAST results are available for this feature:
BLAST of FC876410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PEPA_CALJA9.961e-1347.44Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1[more]
ASP3_CAEEL9.961e-1332.88Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
CATE_RABIT1.301e-1248.72Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
PEPA_SUNMU1.699e-1247.44Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2[more]
CHYM_SHEEP3.785e-1241.38Chymosin OS=Ovis aries GN=CYM PE=2 SV=1[more]
CHYM_BOVIN4.944e-1241.38Chymosin OS=Bos taurus GN=CYM PE=1 SV=3[more]
PEPC_MONDO8.433e-1242.86Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV... [more]
PAG2_PIG1.101e-1144.30Pregnancy-associated glycoprotein 2 OS=Sus scrofa ... [more]
CARDG_CYNCA1.101e-1165.31Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PAG2_BOVIN1.879e-1135.90Pregnancy-associated glycoprotein 2 OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionC32004D11EF DevOvary1 Citrus clementina cDNA clone C32004D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876410 ID=FC876410; Name=FC876410; organism=Citrus clementina; type=EST; length=639bp
GAAAACAATTCAAACTCGAATTAACGGCCAAAGCACATACTCCAGAAACG
CATTTTATTCGCTTTTCTTTCTTTATTCTGACCCTCGATTTCTCGGTCTC
GTCAGTCCACTTCTTTACTCTGTCTGTGCTCTTTTGAAAGATACTCAGTT
GTCGACATGGGAACCAAATTCACAGCCATTCGGGTTGCACTTTTTCTTTT
TCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCCAAATGATGGATTGGTAA
GAATTGGGCTGAGAAAGAAGAAATTGGATCAGATCAATCGCCTTGTTGGA
CAGACTGTATCTAAGGAAGAGGAAACGATGAGAACACCTGTCAGAAGATA
TAATCTCCATGGTAGTCTTGGAGATTCTGATACTGATATTGTTGCATTAA
ATAACTTTATGGATGCTCAGTATTTTGGGGAGGTTAGTATTGGCACACCT
TCCCAGACCTTCACTGTGATATTTGACACAGGAAGTTCTAATCTTTGGGT
GCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTGCTATTTCCACTCCAAGT
ATAAGTCCAGCCATTCAAGTACCTACNAAAGGAATGGGACATCTGCCGCA
ATCCAATATGGGACTGGAGCAATTTCTGGTTTCTTTAGC
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