FC876416

Overview
NameFC876416
Unique NameFC876416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10356 contig Ccv1_Contig10356:1..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC24_ORYSJ (Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC24 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.005e-27
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 3
Query:  192 KESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKE-PFHY-DGEFNLLLSDWWHRSVHEAE 593
            +E I+  +NGQ PGPTI A  GDT+ V + N+     + IHWHGI Q GTPWADG A ++QCP+ PG  Y YRF V  + GT ++H H    R A +YG+LI+    G K  PF   D E  ++L +WW  +V++ +
Sbjct:   43 QEMIITAVNGQLPGPTIVATEGDTVVVHMVNES-PYNMTIHWHGIFQRGTPWADGPAMVTQCPVRPGGNYTYRFNVTGQEGTLWWHSHFSFLR-ATVYGALIIKPRGGAKAYPFPVPDEEVVVILGEWWKTNVYDLQ 177          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC12_ARATH (Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.005e-27
Identity = 61/162 (37.65%), Postives = 94/162 (58.02%), Query Frame = 3
Query:   96 ILMLCSVFETSYG-SKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVD-KAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWH 572
            +L  CS+F  S   +K +H+ + ++       CK    + +NG FPGPT+    GDT+ V++ N+     + IHWHG+RQ+ T WADG   ++QCPI PG++Y YRF +  + GT ++H H    R A +YG+LI+    G   PF   D +  L+L +WW+
Sbjct:   10 LLFFCSLFSASLIIAKVQHHDFVIQETPVKRLCKTRNAITVNGMFPGPTLEVNNGDTLEVKVHNRA-RYNITIHWHGVRQIRTGWADGPEFVTQCPIRPGKSYTYRFTIQGQEGTLWWHAHSSWLR-ATVYGALIIHPTPGSSFPFPKPDRQTALMLGEWWN 169          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC3_ARATH (Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.006e-26
Identity = 59/132 (44.70%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  189 CKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHY-DGEFNLLLSDWWHRS 578
            C+    + +NGQ+PGPT+  R GD++A+ + N+     + IHWHGIRQL  PWADG   I+QCPI PG+TY YRFK+ D+ GT ++H H    R A +YG+LI+    G   PF     +  +LL +WW R+
Sbjct:   43 CRTHQSITVNGQYPGPTLVVRNGDSLAITVINRA-RYNISIHWHGIRQLRNPWADGPEYITQCPIRPGQTYTYRFKIEDQEGTLWWHAHSRWLR-ATVYGALIIYPRLGSPYPFSMPKRDIPILLGEWWDRN 172          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC2_BOTFU (Laccase-2 OS=Botryotinia fuckeliana GN=lcc2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.006e-26
Identity = 61/149 (40.94%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  141 TRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHE 587
            TR Y   VE    +PD      M  NG  PGP I A  GD + + +TN L   G  IHWHGIRQLG+   DG   ++QCPI PG+T  Y+F+  + GT +YH H  +Q + GL+G LI+   +G     + +    + L DW H+SV E
Sbjct:   68 TREYWLSVENSTITPDGYTRSAMTFNGTVPGPAITADWGDNLIIHVTNNLQHNGTSIHWHGIRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQATQYGTTWYHSHFSLQYADGLFGPLII---NGPATADYDEDVGAIFLQDWAHKSVFE 213          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC2_ORYSJ (Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.620e-26
Identity = 59/166 (35.54%), Postives = 95/166 (57.23%), Query Frame = 3
Query:  102 MLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKVDK-AGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEAE 593
            +L ++F     +  + Y++++     S  C E  ++ +NG +PGPTI AR GD + V +TN +    + IHWHG++Q    WADG A ++QCPI  G +Y+Y F V +  GT ++H H+   R A ++G++++  A G   PF   D E  ++L +WWH  V   E
Sbjct:   15 LLLALFALGAHADVKRYQFDIVMSNVSRLCHEKAMVTVNGSYPGPTIYAREGDRVIVNVTNHV-KHNMTIHWHGLKQRRNGWADGPAYVTQCPIGSGGSYVYDFNVTRQRGTLWWHAHIAWMR-ATVHGAIVILPAAGVPYPFPKPDDEAEIVLGEWWHADVETVE 178          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC9_ORYSJ (Putative laccase-9 OS=Oryza sativa subsp. japonica GN=LAC9 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.422e-26
Identity = 59/168 (35.12%), Postives = 96/168 (57.14%), Query Frame = 3
Query:   93 WIL---MLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHY-DGEFNLLLSDWWHRSV 581
            W+L   +L      ++G+KTRHY + +    ++  C E  ++ +NGQFPGPTI AR GD + V + N    + + IHWHG+ Q   PW+DG   I+QCPI PG  + Y+  + ++ GT ++H H    R A ++G++++    G   PF   D E  ++L +WW+  +
Sbjct:   11 WLLAGVVLALAVNPAHGAKTRHYDFFITETNYTRLCHEKSILTVNGQFPGPTIYARKGDLVIVNVHNN-GNKNITIHWHGVDQPRNPWSDGPEFITQCPIRPGGNFTYQVILSEEEGTLWWHAHSDFDR-ATVHGAIVIHPKRGTTFPFKKPDKEIPVILGEWWNDDI 176          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC4_ARATH (Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.422e-26
Identity = 65/164 (39.63%), Postives = 93/164 (56.71%), Query Frame = 3
Query:   93 WILMLCS---VFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWW 569
            W L L S   VF     S  RHYK+ V     +  C     + +NG++PGPTI AR  DT+ +++ N +    V IHWHG+RQ+ T WADG A I+QCPI PG+ Y Y + +  + GT ++H H+   R A +YG+L++    G   PF   D E  ++L +WW
Sbjct:    7 WFLFLVSFFSVFPAPSESMVRHYKFNVVMKNVTRLCSSKPTVTVNGRYPGPTIYAREDDTLLIKVVNHV-KYNVSIHWHGVRQVRTGWADGPAYITQCPIQPGQVYTYNYTLTGQRGTLWWHAHILWLR-ATVYGALVILPKRGVPYPFPKPDNEKVIVLGEWW 168          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC17_ORYSJ (Putative laccase-17 OS=Oryza sativa subsp. japonica GN=LAC17 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 60/168 (35.71%), Postives = 96/168 (57.14%), Query Frame = 3
Query:   87 TCWIL---MLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNL---LLSDWW 569
            +CW+L   +LCS+      +K +++++ +        CK   +M +NGQFPGPT+    GD++ + L N+     + +HWHG+RQ+ T W+DG   ++QCP+ PG++Y YRF V  + GT ++H H    R A +YG+L++   DG   PF       L   LL +WW
Sbjct:    7 SCWLLSLALLCSLA----AAKEQYHEFVIRETTVKRLCKSHNIMTVNGQFPGPTLEINEGDSLIINLINR-GRYNMTLHWHGVRQMRTGWSDGPEYVTQCPVRPGQSYRYRFTVAAQEGTLWWHAHSSWLR-ATVYGALLIRPRDGTSYPFDVQPTRELAPILLGEWW 168          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC11_ARATH (Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.623e-26
Identity = 58/151 (38.41%), Postives = 92/151 (60.93%), Query Frame = 3
Query:  144 RHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYD-GEFNLLLSDWWHRSVHEA 590
            + Y+++V+    S  C    ++ +NG FPGPT+ AR GD + + +TN +    + IHWHG++Q    WADG A I+QCPI  G++YLY F V  + GT ++H H+   R A +YG++++  A G+  PF     E N++L +WW++ V  A
Sbjct:   26 KKYQFDVQVKNISRICNAKPIVTVNGMFPGPTVYAREGDRVIINVTNHVQYN-MSIHWHGLKQYRNGWADGPAYITQCPIQTGQSYLYDFNVTGQRGTLWWHAHILWLR-ATVYGAIVILPAPGKPYPFPQPYQESNIILGEWWNKDVETA 174          
BLAST of FC876416 vs. ExPASy Swiss-Prot
Match: LAC22_ORYSJ (Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC22 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.897e-25
Identity = 60/166 (36.14%), Postives = 93/166 (56.02%), Query Frame = 3
Query:   78 VVVTCWILMLCSVFETSYGSKTRHYKWEVEYMFWSPDCKESIVMGINGQFPGPTIRARAGDTIAVELTNKLYTEGVVIHWHGIRQLGTPWADGTASISQCPINPGETYLYRFKV-DKAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHY-DGEFNLLLSDWW 569
            ++  C++L   S         TRHYK+ V     +  C    ++ +NG+FPGPT+ AR GD + V++ N +    V IHWHG+RQ+ T W DG A I+QCPI PG ++LY F +  + GT  +H H+   R A ++G++++    G   PF     E  ++L +WW
Sbjct:   14 LMAACFLLQALSAHAI-----TRHYKFNVVMRNMTRLCSTKPILTVNGKFPGPTLYAREGDNVLVKVVNHV-AHNVTIHWHGVRQIRTGWYDGPAYITQCPIQPGSSFLYNFTITGQRGTLLWHAHINWLR-ATVHGAIVILPKLGVPYPFPAPHKEAVIVLGEWW 172          
The following BLAST results are available for this feature:
BLAST of FC876416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
LAC24_ORYSJ9.005e-2744.53Laccase-24 OS=Oryza sativa subsp. japonica GN=LAC2... [more]
LAC12_ARATH9.005e-2737.65Laccase-12 OS=Arabidopsis thaliana GN=LAC12 PE=2 S... [more]
LAC3_ARATH2.006e-2644.70Laccase-3 OS=Arabidopsis thaliana GN=LAC3 PE=2 SV=... [more]
LAC2_BOTFU2.006e-2640.94Laccase-2 OS=Botryotinia fuckeliana GN=lcc2 PE=2 S... [more]
LAC2_ORYSJ2.620e-2635.54Laccase-2 OS=Oryza sativa subsp. japonica GN=LAC2 ... [more]
LAC9_ORYSJ3.422e-2635.12Putative laccase-9 OS=Oryza sativa subsp. japonica... [more]
LAC4_ARATH3.422e-2639.63Laccase-4 OS=Arabidopsis thaliana GN=IRX12 PE=2 SV... [more]
LAC17_ORYSJ4.469e-2635.71Putative laccase-17 OS=Oryza sativa subsp. japonic... [more]
LAC11_ARATH7.623e-2638.41Laccase-11 OS=Arabidopsis thaliana GN=LAC11 PE=2 S... [more]
LAC22_ORYSJ2.897e-2536.14Laccase-22 OS=Oryza sativa subsp. japonica GN=LAC2... [more]

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Properties
Property NameValue
Genbank descriptionC32004E07EF DevOvary1 Citrus clementina cDNA clone C32004E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876416 ID=FC876416; Name=FC876416; organism=Citrus clementina; type=EST; length=632bp
GGATCTTTCACCTTCTTTCTTACTCTTCATTAATAGTTGGATAGAAAAAA
ATGGGGTTAGGTTTGAGACATGTTGCTGTTGTTGTCACTTGTTGGATACT
AATGTTGTGTTCAGTTTTTGAGACCTCGTACGGTTCAAAAACCAGACACT
ATAAGTGGGAAGTAGAGTACATGTTTTGGTCCCCGGATTGCAAAGAAAGC
ATAGTGATGGGGATCAACGGTCAGTTTCCGGGGCCGACGATCCGAGCCAG
GGCCGGCGACACGATCGCCGTCGAGCTCACTAACAAGCTCTATACTGAAG
GAGTTGTGATTCATTGGCACGGAATCAGACAGCTCGGCACTCCATGGGCT
GATGGCACTGCTTCCATCTCCCAGTGTCCTATTAACCCCGGAGAAACCTA
TCTTTACAGATTCAAAGTTGACAAGGCAGGAACGTACTTTTACCATGGAC
ACTTAGGGATGCAAAGATCAGCAGGTCTGTACGGATCTCTGATTGTGGAC
GTGGCAGACGGAGAGAAAGAGCCATTCCATTATGATGGGGAGTTCAACTT
GTTGTTAAGTGATTGGTGGCACAGAAGTGTCCATGAAGCAGAGGTCGGCC
TCTCCTCAGGCCATTACGTTGGATTGGTGAGC
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